We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GNN | 2009 | 1 |
| 3HZG | 2009 | 6 |
| 3IEQ | 2009 | 4 |
| 3I0P | 2009 | 4 |
| 3I3R | 2009 | 11 |
| 2KN9 | 2009 | 10 |
| 3IEW | 2009 | 5 |
| 3ICO | 2009 | 2 |
| 3IDO | 2009 | 10 |
| 3GK3 | 2009 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2ke0 | - | http://www.ingentaconnect.com/content/ben/cmc/2010/00000017/00000015/art00005 | In silico prediction of binding sites on proteins | 2010 | S Leis, S Schneider, M Zacharias - Current medicinal chemistry, 2010 - ingentaconnect.com | ... 15 Leis et al. Table 3. Protein Test Structures pdb entry molecule state ligand Rmsd (?)b 2ANO E.coli dihydrofolate reductase bound Inh. MS-SH08-17 0 ... 1FKS_2VCD 1FKS based on 2VCD structure homology --- 2.3 1FKS_2KE0 1FKS based on 2KE0 structure homology --- 2.6 ... |
| 2 | 7m53 | - | https://www.nature.com/articles/s42003-022-03262-7 | Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit | 2022 | NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com | a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain |
| 3 | 4ylg | - | http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16940.html | Cryo-EM structure of the yeast U4/U6. U5 tri-snRNP at 3.7 resolution | 2016 | THD Nguyen, WP Galej, X Bai, C Oubridge - Nature, 2016 - nature.com | ... 4: Secondary structure of the snRNAs in tri-snRNP. ... S. pombe ILS spliceosomal complex 19, 20(red, PDB 3JB9), was overlaid on GDPs found in other guanine-nucleotide binding proteins(grey, PDB coordinates: 1DAR, 2E1R, 2WRI, 1Z0I, 5CA8, 1XTQ, 4YLG, 1SF8, 5BXQ ... |
| 4 | 6q04 | 6VXX | https://www.mdpi.com/1999-4915/12/9/909 | The sialoside-binding pocket of SARS-CoV-2 spike glycoprotein structurally resembles MERS-CoV | 2020 | M Awasthi, S Gulati, DP Sarkar, S Tiwari, S Kateriya- Viruses, 2020 - mdpi.com | Multiple sequence alignment of the NTD domains was performed with the Clustal W program [15]. 2.2. Structure Prediction. The cryo-EM structures of SARS-CoV-2 ( PDB ID: 6VXX) [8] and MERS-CoV ( PDB ID: 6Q04 ) [11] spike glycoproteins were used as the starting point for |
| 5 | 7lxx | 7ly3, 7ly2, 7lxy, 7ly0 | https://link.springer.com/article/10.1007/s00018-021-04008-0 | Structural and functional insights into the spike protein mutations of emerging SARS-CoV-2 variants | 2021 | D Gupta, P Sharma, M Singh, M Kumar- Cellular and Molecular, 2021 - Springer | The postfusion state is characterized by the formation of a needle-like structure in which both FP and TM associate together ( PDB id: 6M3W) (Fig. 2E). The postfusion trimer state is |
| 6 | 6nb6 | 6nb7 | https://www.nature.com/articles/s41598-020-74715-4 | Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2 | 2020 | A Basu, A Sarkar, U Maulik- Scientific reports, 2020 - nature.com | Every coronavirus comprises four structural proteins namely spike, envelope, nucleocapsid and membrane proteins Similarly, PDB ID 6M17 shows the presence of sodium-dependent neutral amino acid transporter B(O)AT1 in its structure |
| 7 | 4gri | - | https://journals.asm.org/doi/abs/10.1128/ecosalplus.ESP-0002-2016 | Aminoacyl-tRNA synthetases in the bacterial world | 2016 | R Gieg, M Springer- EcoSal Plus, 2016 - Am Soc Microbiol | Note that aaRSs requiring cognate tRNA for activation can tightly bind their amino acid substrates in the absence of tRNA, thereby leading to inactive conformers as seen, e.g., in E. coli ArgRS (4oby) (178) and B. burgdorferi GluRS (4gri) (unpublished from the Seattle Structure Genomics Center for Infectious Disease). |
| 8 | 4w91 | - | https://link.springer.com/article/10.1007/s00775-017-1527-3 | Ironsulfur clusters biogenesis by the SUF machinery: close to the molecular mechanism understanding | 2017 | J Prard, SO de Choudens- JBIC Journal of Biological Inorganic, 2017 - Springer | Structural and biophysical analyses of Suf proteins SufS There are five crystal structures of SufS protein ( PDB numbers: 5J8Q; 4W91 ; 1T3I; 5DB5; 1I29) whose three published (Fig. 4) [7173]. The first crystal structure was Fig. 4 Overview of Suf protein structures SufS 1I29 |
| 9 | 6q05 | - | https://www.nature.com/articles/s41467-020-16876-4 | Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution | 2020 | J Yu, S Qiao, R Guo, X Wang- Nature communications, 2020 - nature.com | structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution. Download PDF. Article; Open Access; Published: 17 June 2020. Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution |
| 10 | 3u0g | 4m0j, 4tvi | https://www.nature.com/articles/srep38183 | Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold | 2016 | T Pavkov-Keller, GA Strohmeier, M Diepold- Scientific reports, 2016 - nature.com | from Mycobacterium smegmatis 48 , 3UYY from Deionococcus radiodurans 49 , 3U0G from Burkholderia Crystallographic data processing and structure refinement statistics are presented in Table 4 confirmed function are D-amino acid aminotransferases (eg PDB -code: 1DAA |