We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SZP | 2021 | 0 |
| 7SBC | 2021 | 5 |
| 7N7S | 2021 | 1 |
| 7N1L | 2021 | 0 |
| 7MYS | 2021 | 0 |
| 7MYQ | 2021 | 0 |
| 7SZV | 2021 | 0 |
| 7MIW | 2021 | 0 |
| 7MI0 | 2021 | 0 |
| 7MHV | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hwi | - | http://www.springerlink.com/index/C13H461841653R88.pdf | Structural insight into the mode of interactions of SoxL from Allochromatium vinosum in the global sulfur oxidation cycle | 2012 | A Bagchi - Molecular Biology Reports, 2012 - Springer | ... like protein) from Mycobacterium tuberculosis (PDB code: 3HWI) with sequence identity of 34 %. ... The predicted structure is similar to the crystal structure of probable thiosulfate sulfurtransferase Cysa2 (rhodanese-like protein) from Mycobacterium tuberculosis (PDB code: 3HWI). ... |
| 2 | 7m5e | - | https://digital.lib.washington.edu/researchworks/handle/1773/50705 | Development of Automated Methods for Modeling Ligands in Cryo-Electron Microscopy Data | 2023 | A Muenks - 2023 - digital.lib.washington.edu | compared our results to their respective deposited structures and high-resolution crystal crystal structure . For each ligand-protein pair in the EMDB dataset, the PDB was searched for |
| 3 | 4nps | 4yk1 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4109528 | Full-Length Structure of the Host Targeted Bacterial Effector Bep1 Reveals a Novel Structural Domain Conserved in FIC Effector Proteins From Bartonella | 2024 | M Huber, A Wagner, J Reiners, CEM Seyfert, T Sharpe - papers.ssrn.com | the full-length structure of Bep1 from Bartonella clarridgeiae as the first complete structure of a Bep- In addition to our full-length Bep1 structure , that shows the insertion of the structural |
| 4 | 2n6t | 2n6x, 2n6w, 2n6s | https://www.biorxiv.org/content/10.1101/554931v1.abstract | Conditional Prediction of RNA Secondary Structure Using NMR Chemical Shifts | 2019 | K Zhang, AT Frank- bioRxiv, 2019 - biorxiv.org | chemical shifts were downloaded from the Protein Data Bank ( PDB : http://www. pdb .org) and native NMR-derived structure and the comparison structure is the CS-Folding generated structure 2JYM 2L5Z 2LK3 2MIS 2QH2 1Z2J 1JO7 5UZT 2N3Q 5IEM 2L3E 2N6T 2LPS 2N6S |
| 5 | 3qh4 | - | https://www.researchsquare.com/article/rs-187084/latest.pdf | Protein Engineering for Enhanced Enantioselectivity of Carboxylesterase Est924 Toward Ethyl 2-Arylpropionates | 2021 | X Liu, M Zhao, X Fan, Y Fu - 2021 - researchsquare.com | Enhancement of the enantioselectivity of carboxylesterase A by structure -based mutagenesis. J Biotechnol Page 13. Page 13/14 PDB entry A1 A2 B1 B2 Est924 I203 A203 G208 I212 3H17 M193 V194 G198 M202 3QH4 A209 F210 A214 M218 3WJ1 F197 L198 H202 F206 |
| 6 | 4xi8 | 4py3, 4n67, 4lu4 | https://www.theses.fr/2017SACLS452 | Structure et fonction des toxines bactriennes domaine FIC | 2017 | S Veyron - 2017 - theses.fr | proteins from Helicobacter pylori and Neisseria meningitidis, which were determined as part of Structural Genomics Initiatives in 2006 ( PDB entries 2G03 and 2F6S, which have no associated publications). However, the structure of FIC proteins only began to be discussed |
| 7 | 3r1i | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867646/ | Insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican | 2013 | MW Sarwar, IB Saleem, A Ali, F Abbas - Bioinformation, 2013 - ncbi.nlm.nih.gov | … used for multiple sequence alignment of ArDH with other dehydrogenases from Mycobacterium marinum (PDB Id: 3R1I), Candida parapsilosis ... |
| 8 | 2lwk | - | https://books.google.com/books?hl=en&lr=&id=0dwBEAAAQBAJ&oi=fnd&pg=PA332&dq=%222... | Maicol Bissaro, Mattia Sturlese and Stefano Moro | 2020 | K Kuca, M Tutone, E Malinowska- In Silico Methods for Drug, 2020 - books.google.com | against the PDB reference.(B) Superimposition between the experimental NMR complex ( PDB ID 2LWK , green-colored RMSD of RNA phosphate atoms belonging to the backbone, computed against the PDB reference E) Flexibility characterizing the RNA structure during DPQ |
| 9 | 3p96 | - | http://ir.inflibnet.ac.in:8080/jspui/bitstream/10603/224095/3/jbc%202014.pdf | Identification of Novel Drug Target Pathways and Scaffolds to Combat Tuberculosis | 2018 | A Garima - 2018 - ir.inflibnet.ac.in | of Porphyromonas gingivalis into host cells by modulating host cytoskeletal architecture , innate immune of SerB1- and SerB2-modeled proteins over 3FVV and 3P96 , respectively, resulted The superimpositions of SerB1 and SerB2 models over HPSP crystal structure resulted in |
| 10 | 6ws6 | - | https://sciendo.com/pdf/10.2478/rrlm-2021-0022 | Insights into Innate Immune Response Against SARS-CoV-2 Infection | 2021 | A Huanu, AM Georgescu, AV Andrejkovits- Revista Romn de, 2021 - sciendo.com | The NET structure made by activated neutrophils and mediated by reactive oxygen species bacterial lipopolysaccharides (LPS), flagella, cilia, bacterial unmethylated DNA, or viral structures like dsARN or In addition, sev- eral structural and non- structural SARS-CoV-2 proteins |