Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
7LXZ	2021	10
3NRR	2010	10
3IDO	2009	10
7N8I	2021	10
2KN9	2009	10
3IXC	2009	10
7LXX	2021	10
3ENK	2008	10
3MEQ	2010	10
3QI6	2011	10

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	3q8n	-	http://www.sciencedirect.com/science/article/pii/S0734975014001992	Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications	2015	F Steffen-Munsberg, C Vickers, H Kohls, H Land… - Biotechnology …, 2015 - Elsevier	In this review we analyse structure/sequence-function relationships for the superfamily ofPLP-dependent enzymes with special emphasis on class III transaminase.
2	7jv2	7jva	https://www.cell.com/cell-reports/pdf/S2211-1247(21)01652-1.pdf	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding	2021	D Mannar, JW Saville, X Zhu, SS Srivastava- Cell reports, 2021 - cell.com	See Table S2 for PDB entries included in this analysis. (D) Structural overlap of all antibodies selected on the SARSCoV-2 RBD. Mutational positions within the RBD are highlighted. (E)
3	3kc6	3khw	https://link.springer.com/chapter/10.1007/82_2014_386	Molecular determinants of pathogenicity in the polymerase complex	2014	G Gabriel, E Fodor- Influenza Pathogenesis and Control-Volume I, 2014 - Springer	were generated with PyMOL using the following PDB accession numbers: PA endonuclease Structures were generated using the following PDB accession numbers: 3KC6 for H5N1
4	4w91	-	https://link.springer.com/article/10.1007/s00775-017-1527-3	Ironsulfur clusters biogenesis by the SUF machinery: close to the molecular mechanism understanding	2017	J Prard, SO de Choudens- JBIC Journal of Biological Inorganic, 2017 - Springer	Structural and biophysical analyses of Suf proteins SufS There are five crystal structures of SufS protein ( PDB numbers: 5J8Q; 4W91 ; 1T3I; 5DB5; 1I29) whose three published (Fig. 4) [7173]. The first crystal structure was Fig. 4 Overview of Suf protein structures SufS 1I29
5	5b8i	-	https://journals.asm.org/doi/abs/10.1128/aac.01627-18	In Vitro and In Vivo Assessment of FK506 Analogs as Novel Antifungal Drug Candidates	2018	Y Lee, KT Lee, SJ Lee, JY Beom- Antimicrobial agents, 2018 - Am Soc Microbiol	However, the structure of the fungal ternary complex from Coccidioides immitis has recently been reported ( PDB accession number 5B8I ), which would facilitate the rational design of FK506 analogs that can discriminate human and fungal calcineurins
6	4wi1	-	https://www.sciencedirect.com/science/article/pii/S135964461730538X	Drug targeting of one or more aminoacyl-tRNA synthetase in the malarial parasite Plasmodium falciparum	2018	M Yogavel, R Chaturvedi, P Babbar, N Malhotra- Drug discovery today, 2018 - Elsevier	HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled Takeda compound B (green, PDB ID: 5VAD Among these, benzoxaboroles target the editing site of Pf-LRS cyto effectively and the crystal structure for the
7	4tv4	-	https://www.sciencedirect.com/science/article/pii/S0092867419302028	Cryo-EM Structure and Assembly of an Extracellular Contractile Injection System	2019	F Jiang, N Li, X Wang, J Cheng, Y Huang, Y Yang- Cell, 2019 - Elsevier	Overall, the PVC particle displays a simplified structure of the bacterial phage A simplified architecture of T4 phage baseplate lies in the PVC syringe: Pvc5, Pvc7, Pvc8, and Pvc10 form a continuous central spike extending from the inner tube; Pvc11 (D) Initial models of Pvc1, Pvc2, Pvc9 and Pvc11 were built based onPDB: 4TV4, 3J9Q, 2IA7, 5HX2, respectively
8	5vxt	-	https://www.sciencedirect.com/science/article/pii/S0304389422001923	Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds	2022	J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier	Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT).
9	6q07	-	https://www.ncbi.nlm.nih.gov/pmc/articles/pmc8219949/	In-Silico evidence for a two receptor based strategy of SARS-CoV-2	2021	E Milanetti, M Miotto, L Di Rienzo- Frontiers in molecular, 2021 - ncbi.nlm.nih.gov	Complex between MERS spike protein and sialic acid: PDB code 6Q07 Unbound SARS-CoV spike protein: PDB code 6CRV We use DMS (Richards, 1977) to compute the solvent accessible surface for all proteins structure , given their x-ray structure in PDB format (Berman et al
10	3d6b	3ii9	http://pubs.acs.org/doi/abs/10.1021/ja908555n	User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments	2009	L Li, W Du, R Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications	... These crystals yielded a structure of 2.2 ? resolution and space group P2 1 2 1 2 1 (PDBid3D6B). Without ... manuscript. We thank Bart Staker for checking the structure of glutaryl-CoA dehydrogenase for PDB deposition. Supporting Information ...