We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4j3g | - | https://scholarworks.sjsu.edu/etd_projects/829/ | PREDICTING SWITCH-LIKE BEHAVIOR IN PROTEINS USING LOGISTIC REGRESSION ON SEQUENCE-BASED DESCRIPTORS | 2019 | B Strauss - 2019 - scholarworks.sjsu.edu | set. Validated residue binary assignments of 0 (no change in secondary structure ) and 1 (change in secondary structure ) were determined (DSSP) from 3D X-ray structures for sets of virtually identical chains crystallized under different conditions |
| 2 | 5dld | 4hwg | http://www.jbc.org/content/early/2018/05/15/jbc.RA118.001971.abstract | The tetrameric structure of sialic-acid-synthesizing UDP-GlcNAc 2-epimerase from Acinetobacter baumannii: a comparative study with human GNE | 2018 | TP Ko, SJ Lai, TJ Hsieh, CS Yang, Y Chen- Journal of Biological Chemistry, 2018 - ASBMB | Crystal structures of the non-hydrolyzing enzyme are known for at least ten species [ PDB ID: 1F6D, 1O6C, 1V4V, 3BEO, 3DZC, 3OT5, 4HWG, 4NEQ, 5DLD , 5ENZ, and The UDP-interactions with NeuC are fewer than those observed in the GNE structure , probably because |
| 3 | 3qxz | 3i3f, 3s6o | https://scholarworks.iupui.edu/handle/1805/17959 | Analysis of Pseudo-Symmetry in Protein Homo-Oligomers | 2018 | CJR Rajendran - 2018 - scholarworks.iupui.edu | Figure 3.2: PDB File format In a PDB file, as mentioned in the above figure 3.2, the Atom type is used to capture the structures are calculated to get the overall structural index Structure Index for Trimers can be calculated by measuring the distance between the original |
| 4 | 4fkx | - | http://link.springer.com/article/10.1007/s10822-017-0022-9 | Discovery of novel inhibitors for Leishmania nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization | 2017 | AK Mishra, N Singh, P Agnihotri, S Mishra - Journal of Computer- , 2017 - Springer | ... novel LaNDK inhibitors, the crystal structure of Leishmania major NDKb in complex with ADP(PDB ID: 3NGU ... three fold virtual screening uti- lizing Surflex-dock, GeomX and Flex-X, as ourstructure lacks the ... TbNDK (4FKX) 32,672 14,027 20,443 3566 32.7 6.6 Hexamer Dimer ... |
| 5 | 3p0x | - | http://ira.lib.polyu.edu.hk/handle/10397/35473 | Identification of protein-ligand binding site using machine learning and hybrid pre-processing techniques | 2015 | YKG Wong - 2015 - ira.lib.polyu.edu.hk | ... This type is suit- able if no structural information about the target is available. Another one isstructure- ... All this information can be found from the Protein Data Bank (PDB) [6] or Protein Qua-ternary Structure file server (PQS) [7], which show the atomic coordinates and the qua- ... |
| 6 | 3pgz | 3lgj | http://www.freepatentsonline.com/y2015/0218629.html | ENZYME CONSTRUCT | 2015 | A Heron, J Clarke, R Moysey… - US Patent …, 2015 - freepatentsonline.com | ... In order to assess whether a suitable protein structure exists to use as a “template” to build aprotein model, a search is performed on the protein data bank (PDB) database. ... The sequencealignment and template structure are then used to produce a structural model of the ... |
| 7 | 4wxt | 5uth | https://repositorio.unesp.br/handle/11449/152293 | Mecanismo de ao e infeco por Corynebacterium pseudotuberculosis: expresso, purificao e caracterizao de protenas relacionadas ao metabolismo central | 2017 | LA Kawai - 2017 - repositorio.unesp.br | Page 9. PBS: Tampo fosfato contendo NaCl PDB : Protein Data Bank RMN: Ressonncia Magntica Nuclear Corynebacterium pseudotuberculosis: Role of Electrostatic Forces in the Stability of the Secondary Structure , minha contribuio foi realizada na reviso final, onde |
| 8 | 5eo6 | 4wsh, 4exq | https://kar.kent.ac.uk/60615/1/Microbiol.%20Mol.%20Biol.%20Rev.-2017-Dailey-.pdf | Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product | 2017 | A Bailey, R Webster, R Hunter, N Freemantle, G Rait - 2017 - Microbiol Mol Biol Rev | The crystal structure of the P. aeruginosa enzyme shows that it is composed of Interestingly, crystal structures of P. aeruginosa variants with cysteine substitutions show decreasing Although structural information on porphobilinogen synthases from many sources shows that the |
| 9 | 3tmg | - | http://www.mdpi.com/2073-4352/3/2/306 | Glycine Betaine Recognition through Cation-PI Interactions in Crystal Structures of Glycine Betaine Complexes with C-Ethyl-pyrogallol [4] arene and C-Ethyl-resorcin [4]arene as Receptors | 2013 | I Fujisawa, K Aoki - Crystals, 2013 - mdpi.com | ... 18. Gardberg, A.; Fox, D.; Staker, B.; Stewart, L. Crystal Structure Of Glycine Betaine, L-Proline ABC Transporter, Glycine/Betaine/L-Proline-Binding Protein (ProX) from Borrelia Burgdorferi;PDB (Protein Data Bank): Upton, NY, USA, 2013; No. 3TMG. 19. ... |
| 10 | 5umf | - | https://books.google.com/books?hl=en&lr=&id=XARADwAAQBAJ&oi=fnd&pg=PA97&dq=%225U... | Design of synthetic symmetrical proteins | 2017 | JRH Tameb, ARD Voet- Synthetic Biology: Volume 2, 2017 - books.google.com | assembly, Ribulose-phosphate structure but since exhibits alpha 3-epimerase, C and 2 PDB : 5UMF ) and 12-fold rotational symmetry (cartoon depiction; from left to right, PDB : 4YY2, 4YXX designs will without any doubt improve our understanding of protein structure and stability |