We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tzs | 3tf6 | http://www.pnas.org/content/early/2015/07/30/1508902112.short | Siderocalin-mediated recognition, sensitization, and cellular uptake of actinides | 2015 | BE Allred, PB Rupert, SS Gauny… - Proceedings of the …, 2015 - National Acad Sciences | ... molecules from available crystal structures (the structures described in this work plus PDB (41)accession ... 1 × 8U, 3FW4, 3FW5, 3HWE, 3HWF, 3HWG, 3K3L, 3PEC, 3PED, 3TF6, 3TZS, 3UOD,and ... of key calyx residues, colored as in H, isolated from the 73-structure superposition ... |
| 2 | 3t7c | 3pgx | http://www.ir.juit.ac.in:8080/jspui/handle/123456789/23859 | Identification of Genes Involved in IN VIVO Virulence of Mycobacterium Fortuitum as Potential Drug Target | 2020 | R Srivastava - 2020 - ir.juit.ac.in | acidic, hypoxic and detergent stress conditions. Structural and functional characterization of most potent ORF Mfsdr was done using in silico approaches. MfSdr was predicted to be acid synthesis. Secondary structure of MfSdr generated using Robetta server showed presence |
| 3 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 4 | 3uam | - | http://core.kmi.open.ac.uk/download/pdf/11699007.pdf | X-ray structure and function studies of key enzymes for biomass conversion: GH6 cellobiohydrolases and GH61 lytic polysaccharide monooxygenases (LPMO) | 2013 | M Wu - 2013 - core.kmi.open.ac.uk | ... crassa Pch/P. chrysosporium Phanerochaete chrysosporium PDB Protein Data Bank PEG Polyethylene ... faecalis CBM33 (PDBcode 4A02)(Vaaje-Kolstad et al., 2012); PDB code 4ALC ... 4ALE, 4ALO, 4ALR, 4ALS, 4ALT) and Burkholderia pseudomallei CBM33 (PDBcode 3UAM). ... |
| 5 | 4mei | 4o3v, 4jf8, 4lso, 4nhf, 4kz1 | https://www.frontiersin.org/articles/10.3389/fmolb.2021.642606/full | Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus | 2021 | J Cappele, A Mohamad Ali- Frontiers in molecular, 2021 - frontiersin.org | The first step of structure comparison was conducted with both DALI (Holm and Sander, 1995) and and Henrick, 2004) to fetch a complete list of VirB8 structures (26 PDB entries 16 structures was conserved (2cc3, 3ub1, 3wz3, 3wz4, 4akz, 4ec6, 4jf8, 4kz1, 4lso, 4mei , 4nhf, 4o3v |
| 6 | 3glq | - | http://xb.cnjournals.com/hnndzr/ch/reader/create_pdf.aspx?file_no=2016010308&fla... | Biological activity on cordycepin and cordycepin triphosphate based on the reverse molecular docking | 2016 | Gong, Guocai , Ling et al. - (J. Hunan Agr. Un. (Nat Sci) ), 2016 - xb.cnjournals.com | 12.83 3IID 8.89 2XZL 12.35 1ZOS 8.85 3LBN 12.34 3GLQ 8.75 1F2U 1QQO PDB 1 ADP Fig.1 Comparison the structure conformation |
| 7 | 3uw1 | 3u7j, 4em8 | https://www.arca.fiocruz.br/handle/icict/24191 | Identificao in silico de potenciais inibidores da ribose 5-fosfato isomerase de Trypanosoma cruzi | 2017 | VVS Castilho - 2017 - arca.fiocruz.br | In this study, novel potential inhibitors were proposed for the Rpi of T. cruzi (TcRpi) based on a computer-aided approach, including structure -based and ligand-based pharmacophore modeling ativo da estrutura cristalogrfica TcRpiB ( PDB 3K7S) .... 70 |
| 8 | 3kzx | - | http://www.biomedcentral.com/1471-2105/16/325/ | Sequence specificity between interacting and non-interacting homologs identifies interface residuesa homodimer and monomer use case | 2015 | Q Hou, BE Dutilh, MA Huynen, J Heringa - BMC , 2015 - biomedcentral.com | ... all 11 monomeric C1-type HAD Hydrolase group (2NYV, 2HSZ, 2HI0, 2AH5, 4EX6, 3MC1, 3D6J,3KBB, 3KZX, 2HDO, 3SD7). ... 6 shows the interface and predicted interface sites in the structure. ...a Secondary stucture of two chains of PDB 3QGM (chain C and D). The interface is in ... |
| 9 | 3quv | - | http://s-space.snu.ac.kr/handle/10371/121334 | Structural Studies of Csd6 Protein from Helicobacter pylori and Rv2258c Protein from Mycobacterium tuberculosis | 2016 | - 2016 - s-space.snu.ac.kr | ... Figure 2-3. Dimeric structure and the oligomeric state of Rv2258c 112 Figure 2-4. Sequence alignment of Rv2258c with its close structural homologs 117 ... Figure 2-6. Comparison of monomer structures of Rv2258c-SFG and M. ... |
| 10 | 3v7o | - | http://ijsrst.com/paper/232.pdf | Molecular Docking Studies of E-Bola Virus Protein VP30 | 2016 | UPA Shaikh, YN Joshi - 2016 - ijsrst.com | ... III. RESULT AND DISCUSSION 1. Homology Modeling and Validation: PDB id3V7O (Crystal structure of the C terminus domain of Ebola virus) was selectedas template with 37.50% sequence identity to query sequence. ... |