SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 7k45 - https://www.science.org/doi/abs/10.1126/science.abm5835 SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies 2022 SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45),
2 6vxx - https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1852117 Virtual screening of phytoconstituents from miracle herb nigella sativa targeting nucleocapsid protein and papain-like protease of SARS-CoV-2 for COVID-19 2022 S Siddiqui, S Upadhyay, R Ahmad- Structure and, 2022 - Taylor & Francis spike glycoprotein (closed state, PDB ID: 6VXX ), spike glycoprotein (open state, PDB ID: structures were subjected to refinements and energy minimizations. Whole pdb structures of
3 3r2v - https://www.sciencedirect.com/science/article/pii/B9780323857307000266 Antimicrobial (viral, bacterial, fungal, and parasitic) mechanisms of action of boron-containing compounds 2023 ED Farfn-Garca, A Kilic, J Garca-Machorro- Viral, Parasitic, Bacterial, 2023 - Elsevier in a complex on the polymerase basic protein 2 of the influenza virus ( PDB code: 3R2V ). in the Protein Data Bank ( PDB ). The obtained crystal structures allow the analysis of BCC with
4 7lxw 7lxx, 7ly0, 7soa, 7sof, 7ly3 https://www.cell.com/cell-reports/pdf/S2211-1247(22)01868-X.pdf Structural analysis of receptor engagement and antigenic drift within the BA. 2 spike protein 2023 JW Saville, D Mannar, X Zhu, AM Berezuk, S Cholak- Cell Reports, 2023 - cell.com Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly
5 7jva - https://www.nature.com/articles/s41467-023-35949-8.pdf Structural basis for a conserved neutralization epitope on the receptor-binding domain of SARS-CoV-2 2023 KYA Huang, X Chen, A Mohapatra- Nature, 2023 - nature.com PDB code 7M7B for 3D11 and 7JVA for S2A4. c IS-9A and similar antibodies extend their footprints upwards and contact residue 408 and the residues 502-504 region.
6 3gaf - https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability 2023 Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42],
7 5upg 6cax https://www.sciencedirect.com/science/article/pii/S0223523423002921 Small molecule LpxC inhibitors against gram-negative bacteria: Advances and future perspectives 2023 Z Niu, P Lei, Y Wang, J Wang, J Yang- European Journal of, 2023 - Elsevier -diphosphate ( PDB code: 2IER); (C) Crystal structure of the E. coli LpxC/LPC-009 complex ( PDB code: 3P3G); (D) Co-crystal structure of LpxC-3 aeruginosa LpxC ( PDB code: 3UHM).
8 4ywj 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb https://www.sciencedirect.com/science/article/pii/S0304416523000181 The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets 2023 S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q),
9 6tys 7ki6, 7ki4 https://www.nature.com/articles/s41467-023-39278-8 Structure and antigenicity of divergent Henipavirus fusion glycoproteins 2023 A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM &
10 6b8s - https://www.sciencedirect.com/science/article/pii/S0005272822004182 Unveiling the membrane bound dihydroorotate: Quinone oxidoreductase from Staphylococcus aureus 2023 FM Sousa, P Pires, A Barreto, PN Refojo- et Biophysica Acta (BBA, 2023 - Elsevier Because of the low solubility of this molecule, we used a structural menaquinone analogue lacking the aliphatic carbon tail, dimethyl-naphthoquinone (DMN). The enzyme showed a ...