We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6Q04 | 2020 | 36 |
| 6NB7 | 2019 | 34 |
| 7K45 | 2020 | 32 |
| 2LWK | 2012 | 31 |
| 7N8H | 2021 | 28 |
| 7JZL | 2020 | 28 |
| 7JVC | 2021 | 27 |
| 6BFU | 2017 | 26 |
| 3LAA | 2010 | 26 |
| 7LXY | 2021 | 26 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6vyb | - | https://www.mdpi.com/1034566 | Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study | 2021 | A Abdelaal Ahmed Mahmoud M Alkhatip- International Journal of, 2021 - mdpi.com | SARS-CoV-2 currently lacks effective first-line drug treatment. We present promising data from in silico docking studies of new Methisazone compounds (modified with calcium, Ca; iron, Fe; magnesium, Mg; manganese, Mn; or zinc, Zn) designed to bind more strongly to key proteins ... We found that the highest binding interactions were found with the spike protein (6VYB), with the highest overall binding being observed with Mn-bound Methisazone at −8.3 kcal/mol, |
| 2 | 6cfp | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1806112 | New anti-viral drugs for the treatment of COVID-19 instead of favipiravir | 2020 | A Akta, B Tzn, R Aslan, K Sayin- Biomolecular Structure, 2020 - Taylor & Francis | According to Table 2, the 6CFP protein is not inhibited by any ligands RNA polymerase proteins with PDB IDs of 6NUR and 6NUS were reported in late 2019 and early In this calculation, the ligand and protein are flexible and solvent molecules surround the entire structure |
| 3 | 6mfk | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3793 | Structural and functional characterization of three Type B and C chloramphenicol acetyltransferases from Vibrio species | 2019 | A Alcala, G Ramirez, A Solis, Y Kim, K Tan- Protein, 2019 - Wiley Online Library | from P. aeruginosa ( PDB IDs: 1XAT, 2XAT7) and E. anophelis ( PDB ID: 6MFK ). Known SAT 1(A)]. When we compared our structures of the Vibrio proteins with CATs and SATs from the PDB , we found the The AfCAT structure had |
| 4 | 3nrr | - | http://www.tandfonline.com/doi/abs/10.1080/07391102.2016.1186560 | Human Dihydrofolate Reductase and Thymidylate Synthase form a complex in vitro and co-localize in normal and cancer cells | 2016 | A Antosiewicz, A Jarmua, D Przybylska - Structure and , 2016 - Taylor & Francis | ... (Konagurthu, Whissto Stuckey, & Lesk, 2006). The AB dimer of the human TS structure 1HVY(Phan et al., 2001) and monomer A of the DHFR structure 1KMS (Klon et al., 2002) ... PDB ID: 3NRR)(Begley et al., 2011), Cryptosporidium hominis (Ch; PDB ID: 1QZF) ... |
| 5 | 4g5d | 4h7p, 4h51 | https://www.benthamdirect.com/content/journals/cmc/10.2174/010929867332327124100... | Targeting Leishmaniasis with Nitrovinyl Derivatives: Synthesis, In Vitro Assessment, and Computational Exploration | 2025 | A Asadipour, FG Khani- Current Medicinal, 2025 - benthamdirect.com | was incorporated into the structures of -nitrostyrenes to conduct PDB files were employed throughout all procedures, each In the main pockets of both 1XTP and 4G5D , a - stacking |
| 6 | 3hwi | - | http://www.springerlink.com/index/C13H461841653R88.pdf | Structural insight into the mode of interactions of SoxL from Allochromatium vinosum in the global sulfur oxidation cycle | 2012 | A Bagchi - Molecular Biology Reports, 2012 - Springer | ... like protein) from Mycobacterium tuberculosis (PDB code: 3HWI) with sequence identity of 34 %. ... The predicted structure is similar to the crystal structure of probable thiosulfate sulfurtransferase Cysa2 (rhodanese-like protein) from Mycobacterium tuberculosis (PDB code: 3HWI). ... |
| 7 | 5eo6 | 4wsh, 4exq | https://kar.kent.ac.uk/60615/1/Microbiol.%20Mol.%20Biol.%20Rev.-2017-Dailey-.pdf | Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product | 2017 | A Bailey, R Webster, R Hunter, N Freemantle, G Rait - 2017 - Microbiol Mol Biol Rev | The crystal structure of the P. aeruginosa enzyme shows that it is composed of Interestingly, crystal structures of P. aeruginosa variants with cysteine substitutions show decreasing Although structural information on porphobilinogen synthases from many sources shows that the |
| 8 | 5umh | - | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c00802 | Estimating Change in Foldability Due to Multipoint Deletions in Protein Structures | 2020 | A Banerjee, A Kumar, KK Ghosh- Journal of Chemical, 2020 - ACS Publications | Figure S6: Root mean-square fluctuation of each residue of the protein in its original conformation (in magenta) and of the protein subject to MPD in residue stretches in the nonloop region (in sea green) for PDB IDs: 4XGQ chain A, 5UMH chain A, 4A5M chain A, 3GUD chain A, and... |
| 9 | 3p32 | - | http://arxiv.org/abs/1602.08119 | Prediction of Flavin Mononucleotide (FMN) Binding Sites in Proteins Using the 3D Search Motif Method and Double-Centroid Reduced Representation of Protein 3D Structures | 2015 | A Banerjee, VM Reyes - arXiv preprint arXiv:1602.08119, 2015 - arxiv.org | ... Since this work utilizes the benefits of using a DCRR structure as opposed to a AAR structureas discussed above one of the very important steps is to convert the structures into DCRR onesfrom the default AAR structure given in PDB. There can be two ways of doing this. ... |
| 10 | 6nb6 | 6nb7 | https://www.researchsquare.com/article/rs-33181/latest.pdf | Computational approach for the design of potential spike protein binding natural compounds in SARS-CoV2 | 2020 | A Basu, A Sarkar, U Maulik - 2020 - researchsquare.com | 2dd8:S, 2ghw:A, 1q4z:A, 1t7g:A, 1xjp:A, 5xlr:A, 5x58:A, 6nb6 :A, 6nb7 ASN 448 are also conserved in ve SARS CoV-2 spike protein PDB structures and changed in SARS-CoV 21. Guex, N., Peitsch, MC, Schwede, T. Automated comparative protein structure modeling with SWISS |