We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CKG | 2018 | 0 |
| 6CKP | 2018 | 0 |
| 6CU3 | 2018 | 0 |
| 6CXM | 2018 | 0 |
| 6CY5 | 2018 | 0 |
| 6EEP | 2018 | 0 |
| 6EFW | 2018 | 0 |
| 6EFX | 2018 | 0 |
| 6MDY | 2018 | 0 |
| 6MFU | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | 3km3, 3k9g | http://www.nature.com/articles/nmeth.3212 | Macromolecular X-ray structure determination using weak, single-wavelength anomalous data | 2014 | G Bunkóczi, AJ McCoy, N Echols… - Nature …, 2014 - nature.com | ... phasing, accounting for 73% of such structures deposited in the Protein Data Bank (PDB;http://www.pdb.org/) 1 in 2013. In the SAD method, the X-ray diffraction from anomalouslyscattering atoms in a molecule provides X-ray phase information for the entire crystal structure ... |
| 2 | 6tz8 | - | https://www.currentscience.ac.in/data/forthcoming/206.pdf | Uneditedversion published onlineon 15/7/2021 | 2021 | G Biswas, R Banerjee - currentscience.ac.in | exclusively with P2, while P1 mediates molecular recognition and binding, as evident from the crystal structures of (truncated) SurA-peptide complexes46 The crystal structure of CaEss1 showed structural similarity to the human PIN1 protein except for the |
| 3 | 3khp | - | https://link.springer.com/content/pdf/10.1186/s12866-020-01763-1.pdf | Proteinprotein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis | 2020 | G Bhargavi, S Hassan, S Balaji, SP Tripathy- BMC microbiology, 2020 - Springer | Rv0148 and Htdy interaction analysis The crystallographically determined structure of Htdy ( PDB code 3KHP ) and the predicted model structure of Rv0148 were used for docking using the ClusPro server b Ramachandran plot for the predicted model structure of Rv0148 |
| 4 | 8dp2 | - | https://www.nature.com/articles/s41467-024-45632-1 | Poly--glutamylation of biomolecules | 2024 | G Bashiri, EMM Bulloch, WR Bramley- Nature, 2024 - nature.com | To produce an FPGS ligand model, MurD, FolC, and FPGS crystal structure coordinates (2UAG, 4UAG, 8DP2, 1W78, and 2VOR) were downloaded from the Protein Data Bank ... structures were overlaid using COOT and appropriate ligands appended to the FPGS structure as indicated by structural and intermolecular contacts in PDB structures 8DP2 and 4UAG, |
| 5 | 3p96 | - | http://www.jbc.org/content/289/36/25149.short | High Throughput Screen Identifies Small Molecule Inhibitors Specific for Mycobacterium tuberculosis Phosphoserine Phosphatase | 2014 | G Arora, P Tiwari, RS Mandal, A Gupta - Journal of Biological Chemistry, 2014 - ASBMB | ... not available. The closest homolog for SerB2 protein was SerB protein from Mycobacterium avium (Protein Data Bank code 3P96) with 84% sequence identity, 99% query coverage, and an E value of 0.0. The superimpositions ... |
| 6 | 4o5h | 4o6r, 4lih, 4u3w, 3ek1, 3i44 | http://www.ppgeq.propesp.ufpa.br/ARQUIVOS/dissertacoes/2017/PPGEQ-2017/Fabio%20B... | ESTUDO COMPUTACIONAL DA ENZIMA ALDEHYDE DEHYDROGENASE DE BIXA ORELLANA (URUCUM) E DOS LIGANTES ALDEÍDO DE BIXINA E NORBIXINA SOB A INFLUÊNCIA DO COFATOR NAD. | 2017 | Fábio Bruno Silva de Souza - ppgeq.propesp.ufpa.br | Therefore, the 3D structure of the PDB Banco de Dados de Protenas (Protein Data Bank) RMN Ressonncia Magntica Nuclear FASTA Arquivo RCSB Site de investigao de Tecnologias para Bioinformtica Estrutural (Research Collaboratory for Structural Bioinformatics) G |
| 7 | 5u9p | - | https://www.sciencedirect.com/science/article/pii/S0022286023007160 | Synthesis, crystallographic and spectroscopic investigation, chemical reactivity, hyperpolarizabilities and in silico molecular docking study of (Z)-2N-(tert | 2023 | FZ Boudjenane, F Triki-Baara, N Boukabcha- of Molecular Structure, 2023 - Elsevier | In Table 9, binding affinities for various poses in the 5U9P inhibitor of the investigated ligand between the molecule and the residues of the proteins 5U9P , 4HP8, 4Z9X, 1VL8, 4IBO and |
| 8 | 6d8w | - | https://www.sciencedirect.com/science/article/pii/S1201971219304175 | Molecular insights into evolution, mutations and receptor-binding specificity of influenza A and B viruses from outpatients and hospitalized patients in | 2020 | FX Ivan, X Zhou, SH Lau, S Rashid, JSM Teo- International Journal of, 2020 - Elsevier | Structural analyses of receptor-binding specificity Then, sialotrisaccharide 3'SLN and 6'SLN isolated from co-crystallized HA-ligand structures in Protein Data Bank ( PDB ) were respectively used as the avian and human receptor analogs to assess receptor-binding |
| 9 | 4nps | 4wgj | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0163654 | Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin | 2016 | FV Stanger, A Harms, C Dehio, T Schirmer - PloS one, 2016 - journals.plos.org | ... Depending on the conservation of crucial active site residues, the FIC fold serves as structuralscaffold for various enzymatic activities, mostly ...The lack of electron density of the flap of the E28G mutant has already been observed in several other FIC domain protein structures (e.g. Bep1 from Bartonella clarridgeiae, PBD: 4NPS or NmFicE102R from Neisseria meningitidis, PDB: 5CGL). ... |
| 10 | 3gbz | - | http://www.sciencedirect.com/science/article/pii/S0022283613004518 | The N-terminal extension of UBE2E ubiquitin conjugating enzymes limits chain assembly | 2013 | FR Schumacher, G Wilson, CL Day - Journal of molecular biology, 2013 - Elsevier | ... (a) Overlay of the core domain of UBE2E1 (3GBZ) onto the structure of UBE2D2~Ub conjugate (PDB: 3A33). The interaction between ubiquitin from one molecule, shown as a ribbon (teal) and a surface, and the backside of UBE2D2 (teal ribbon) is shown. ... |