We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6XK2 | 2020 | 0 |
| 6XNQ | 2020 | 0 |
| 6XR5 | 2020 | 0 |
| 5F9Y | 2016 | 0 |
| 7JFN | 2020 | 0 |
| 5I92 | 2016 | 0 |
| 4XFK | 2015 | 0 |
| 3O0K | 2010 | 0 |
| 6D46 | 2018 | 0 |
| 4XGH | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3uf8 | - | http://bioinformatics.oxfordjournals.org/content/early/2015/03/22/bioinformatics... | AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction | 2015 | D Xu, L Jaroszewski, Z Li, A Godzik - Bioinformatics, 2015 - Oxford Univ Press | ... the first domain in SMT fusion Peptidyl-prolyl cis-trans isomerase (PDB ID 3uf8, chain A ... For example, the linker between the two domains in scFv-IL-1B complex (PDB ID 2kh2 ... for assembly of independently determined domains than for domains extracted from the structure of the ... |
| 2 | 4wi1 | - | https://www.mdpi.com/1422-0067/21/11/3803 | Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches | 2020 | DW Nyamai, Tastan Bishop- International Journal of Molecular, 2020 - mdpi.com | (B) 2D representation of (a) SANC184; (b) SANC257; (c) SANC264; (d) SANC456; (e) SANC622 (f) TCMDC-124506 ( PDB ID: 4WI1 ); (g) glyburide ( PDB ID: 5IFU SANC236 ligand was unstable during the 20 ns simulation with structure flips at 10, 30, 95, 160, and 180 ns of the |
| 3 | 4dlp | 4ncx | https://www.biorxiv.org/content/early/2018/10/11/440891.abstract | Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study | 2018 | DW Nyamai, OT Bishop- bioRxiv, 2018 - biorxiv.org | are highly conserved in their catalytic domains, in general aaRSs show sequence, structural 62 catalytic site architecture and the manner of charging tRNA [18,20] the connective peptide I (CPI) in all enzymes in this class whose structure is characteristic of 113 |
| 4 | 3jst | - | http://www.jbc.org/content/early/2014/12/23/jbc.M114.616870.short | Interactions with the Bifunctional Interface of the Transcriptional Coactivator DCoH1 Are Kinetically Regulated | 2014 | D Wang, MW Coco, RB Rose - Journal of Biological Chemistry, 2014 - ASBMB | ... The prokaryotic and archaeal PCD are obligate dimers ((19) and pdbid 3jst, 2ebb, 1uso ... with theCCP4 program Phaser (30) using the 1.6 Å wild-type DCoH2 structure (PDB ID: 1RU0 ... asymmetricunit, forming a tetramer with a symmetry-related dimer (1). The structure is identical ... |
| 5 | 3l56 | - | http://www.hindawi.com/journals/irt/2013/645348/abs/ | 3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target | 2013 | D Vlachakis, A Karozou, S Kossida - Influenza research and treatment, 2013 - hindawi.com | ... The sequence alignment and the blastp query that followed revealed that the PA domain was available in the PDB databank. ... entry: 4ENF), and the crystal structure of the large C-terminal domain of the polymerase basic protein 2 from influenza A virus (RCSB entry: 3L56). ... |
| 6 | 3dmo | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2863/full | Crystal structures of MBP fusion proteins | 2015 | DS Waugh - Protein Science, 2015 - Wiley Online Library | ... 65 Nineteen of the MBP fusion protein structures deposited in the PDB include surface ... Table 2. Surface Entropy Reduction Mutations in MBP and Their Participation in Crystal Contacts 3DMO D83A/K84A ... |
| 7 | 4ix8 | - | https://link.springer.com/protocol/10.1007/978-1-0716-1036-7_12 | Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies | 2021 | D Suplatov, Y Sharapova, V vedas- Multiple Sequence Alignment, 2021 - Springer | etc.): 3WGB, 2W7E, 3A2B, 1IBJ, 1LKC, 1 V72, 2BKW, 2EZ2, 4IX8 , 1QZ9, 4BA5 The missing loop regions in these PDB structures were reconstructed using the MODELLER software [23] enzymes, the MATT algorithm was used to prepare the initial 3D- structure superimposition of -- This is not a duplicate of their earlier 2018 work |
| 8 | 3dmp | 3qbp, 3e5b, 3hm0 | https://www.sciencedirect.com/science/article/pii/S1570963920301515 | Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations | 2020 | D Sun, X Gong- Biochimica et Biophysica Acta (BBA)-Proteins and, 2020 - Elsevier | The structure diagram of LSTM neural network is shown in Fig. 3. (See Fig. 1, Fig Table 1. Dataset. DataSet, PDB ID 2H8N, 2JBR, 2NQO, 2Y32, 3DFQ, 3ESI, 3G7K, 3HM0, 3OHP, 3RD4, 3 V15, 1IZ1, 1JL2. 1KAM, 1NSW, 2GJD, 2R90, 2ZYZ, 3CDK, 3CO2, 3DMP , 3F6Z, 1BV4, 1YIF |
| 9 | 3i4e | - | http://dx.plos.org/10.1371/journal.pone.0086948.g007 | Silencing Motifs in the Clr2 Protein from Fission Yeast, Schizosaccharomyces pombe | 2014 | D Steinhauf, A Rodriguez, D Vlachakis, G Virgo… - PloS one, 2014 - dx.plos.org | ... forcefield. The crystal structure of the Haloalkane Dehalogenase (PDB entry: 3QNM) was used for the modeling of C2SM1. Likewise ... the C2SM2. Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. The sequence ... |
| 10 | 3i4e | - | http://www.diva-portal.org/smash/record.jsf?pid=diva2:1134642 | Importance of the Clr2 protein in heterochromatin formation in the fission yeast Schizosaccharomyces pombe | 2017 | D Steinhauf - 2017 - diva-portal.org | ... The exact function of Clr2 is unknown but the 3D crystal structure of Clr2 reveals four distinct domains; an N-terminal domain ... The second internal domain resembles a bromo-adjacent homology (BAH) domain, and 3D- structures show the domain interacting with Clr1 through a ... Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. |