We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6ULO | 2019 | 0 |
| 6UWQ | 2020 | 0 |
| 6V45 | 2019 | 0 |
| 6V77 | 2020 | 0 |
| 6V91 | 2020 | 0 |
| 6VH5 | 2020 | 0 |
| 6VS4 | 2020 | 0 |
| 6W15 | 2020 | 0 |
| 6W2O | 2020 | 0 |
| 6W6A | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5jry | - | https://www.sciencedirect.com/science/article/pii/S2001037018301545 | Molecular Mechanisms of Bacterial Bioluminescence | 2018 | E Brodl, A Winkler, P Macheroux- Computational and Structural, 2018 - Elsevier | we also show stick models of the substrate analog (indole-3-acetaldehyde – blue) and the cofactor (NADP+ − grey) in the respective binding sites obtained from the superposition of the LuxC model with indole-3-acetaldehyde dehydrogenase from Pseudomonas syringae (PDB 5IUW) and from the structure of an aldehyde dehydrogenase from Burkholderia multivorans (PDB 5JRY), respectively. |
| 2 | 3tmg | - | https://www.frontiersin.org/articles/10.3389/fmicb.2018.02536/abstract | The GbsR family of transcriptional regulators: functional characterization of the OpuAR repressor | 2018 | E Bremer, S Ronzheimer, B Warmbold- Frontiers in, 2018 - frontiersin.org | the linker region, an aromatic cage is predicted as the inducer-binding site, whose envisioned architecture resembles that subtilis GbsR protein (Nau-Wagner et al., 2012); it is based on the crystal structure of the DNA-binding protein Mj223 of M. jannaschii ( PDB entry 1KU9 |
| 3 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24101/full | Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria | 2012 | E Bitto, DJ Kim, CA Bingman, HJ Kim? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... domains of other proteins including glycine cleavage system transcriptional regulator GcvR (PDB id: 1u8s; unpublished data), formyltetrahydrofolate deformylase (PDB id: 3nrb, 3n0v, and 3lou; unpublished data), and phosphoserine phosphatase SerB (PDB id: 3p96).16 The ... |
| 4 | 3s6l | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.613986/pdf | Modelled structure of the cell envelope proteinase of Lactococcus lactis | 2020 | EB Hansen, P Marcatili- Frontiers in bioengineering and, 2020 - frontiersin.org | The architecture of the L. lactis CEP shares features with a large number of serine proteases to use current state of the art structure prediction algorithms to establish a structural model of software (version 2.3.3)2 was used for visualization and editing of protein structure PDB files |
| 5 | 4wxt | - | http://arca.icict.fiocruz.br/handle/icict/12912 | Reposicionamento de frmacos para malriaum mtodo que identifica alvos no domnio das doenas negligenciadas | 2015 | E Barante - 2015 - arca.icict.fiocruz.br | ... the know-how of many technological areas, with focus on information, computing, and, particularlyon the construction and use of existing Internet databases such as MEDLINE, PubMed and PDB. ...The problems appear by the lack of textual structure or appropriate markup tags. ... |
| 6 | 4g7f | - | https://www.sciencedirect.com/science/article/pii/S1093326319305844 | In silico repositioning of etidronate as a potential inhibitor of the Trypanosoma cruzi enolase | 2020 | EA Valera-Vera, M Say, C Reigada- Journal of Molecular, 2020 - Elsevier | Preparation of the PDBQT files (Protein Data Bank, partial charge (Q), and atom type (T)) was performed using AutoDock Tools v1.5.6 [29]. A search in the Protein Data Bank ( PDB ) [30] was carried to find the crystal structure of TcENO ( PDB ID: 4G7F , Resolution: 2.4 , R |
| 7 | 4ed9 | - | http://dx.plos.org/10.1371/journal.pone.0067901 | Function and X-Ray crystal structure of Escherichia coli YfdE | 2013 | EA Mullins, KL Sullivan, TJ Kappock - PloS one, 2013 - dx.plos.org | ... the same orientation as Figure 4B. PDB entries are 4hl6 (white), 4ed9 (dark blue), 1p5h (green) [69], 1pt7 (cyan) [24], 3ubm (orange) [25], 1*k7 (yellow) [70], 1*74 (magenta) [71], and 2g04 (pink) [72]. (B) ML phylogram of the ... |
| 8 | 4yk1 | - | http://www.superfri.org/superfri/article/view/171 | High performance computing with coarse grained model of biological macromolecules | 2018 | EA Lubecka, AK Sieradzan, C Czaplewski- Supercomputing, 2018 - superfri.org | The source code in the UNRES package with Fortran 90 has the following directory structure : unres (main program modules, source NucB (110 residues, single chain, PDB code: 5OMT), BID domain of Bep6 (137 residues, single chain, PDB code: 4YK1 ), CDI complex |
| 9 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 10 | 3uf8 | - | http://bioinformatics.oxfordjournals.org/content/early/2015/03/22/bioinformatics... | AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction | 2015 | D Xu, L Jaroszewski, Z Li, A Godzik - Bioinformatics, 2015 - Oxford Univ Press | ... the first domain in SMT fusion Peptidyl-prolyl cis-trans isomerase (PDB ID 3uf8, chain A ... For example, the linker between the two domains in scFv-IL-1B complex (PDB ID 2kh2 ... for assembly of independently determined domains than for domains extracted from the structure of the ... |