We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rmi | - | https://uwc-usa.academia.edu/Bar%C4%B1%C5%9FEkim/Drafts | A novel entropy-based hierarchical clustering framework for ultrafast protein structure search and alignment | 2016 | B Ekim - academia.edu | ... Four uncharacterized proteins (1IVZ, 3B4Q, 3DDE, and 4RGI) and their closest structural neighbors (2E7V, 3RMI, 3HLX, and 5BV3, respectively), printed as output by Esperite (Cosine distance between any one of the pairs were 0.0), and to be investigated further through protein nuclear magnetic resonance spectroscopy. ... |
| 2 | 4lsm | - | http://rei.biblioteca.ufpb.br/jspui/handle/123456789/4020 | O proteoma estrutural anterior ao ltimo ancestral universal comum e suas implicaes para a evoluo das primeiras protenas | 2017 | B DO , I Jernimo - 2017 - rei.biblioteca.ufpb.br | With the accretion of the new parts in the structure , the catalytic function emerged. Also it is suggested that the initial structural motifs RMSD: Root-Mean-Square Deviation (Raiz do Desvio Quadrtico Mdio) PDB : Protein Data-Base (Banco de Dados de Protenas) |
| 3 | 4j3g | - | https://www.nature.com/articles/s41477-017-0061-1 | Non-specific activities of the major herbicide-resistance gene BAR | 2017 | B Christ, R Hochstrasser, L Guyer, R Francisco- Nature plants, 2017 - nature.com | We report the crystal structures of BAR, and further delineate structural basis for its substrate selectivity and catalytic mechanism... The search model was an ensemble model generated with Ensembler using eight protein structures homologous to BAR (PBD codes and % identity to BAR: 2JLM (28%), 3DR8 (35%), 4J3G (31%), 4JXQ (33%), 4MBU ... |
| 4 | 3hgb | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.00965/full?report=reader | Mechanism-driven metabolic engineering for bio-based production of free R-lipoic acid in Saccharomyces cerevisiae mitochondria | 2020 | B Chen, JL Foo, H Ling, MW Chang- Frontiers in bioengineering and, 2020 - frontiersin.org | is glycine cleavage system protein H from Mycobacterium tuberculosis ( PDB chain id: 3hgb .1.A domains) were modeled due to the lack of templates with crystal structure of full acetyltransferase component of the pyruvate dehydrogenase complex in Homo sapiens ( PDB |
| 5 | 4w91 | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158749 | Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU | 2016 | B Blauenburg, A Mielcarek, F Altegoer, CD Fage - PLoS , 2016 - journals.plos.org | ... As no structure of B. subtilis SufS was available at the start of our study, we sought to fill this gap.BsSufS was thus crystallized and its structure was determined to 1.7 resolution by molecularreplacement using the B. suis homolog (PDB ID 4W91) [41] as a search ... |
| 6 | 6dj8 | - | http://ej.kubagro.ru/2020/07/pdf/11.pdf | COMPARISON OF STRUCTURAL PROTEIN OF SILKWORM DENSOVIRUS BMDNV-1 WITH PROTEINS OF VIRUSES OF BACTERIA AND ARCHAEA TO STUDY THE POSSIBILITY OF FALSE POSITIVE ANSWERS IN THE ELISA - TESTING OF CATERPILLARS | 2020 | Antonovich ZA, Nazipova NN, ..., Scientific Journal of KubSAU , 2020 - ej.kubagro.ru | PDB . . , SMTL ID : 6dj8 .1 ( Structure of DNA polymerase III subunit beta from Borrelia burgdorferi) |
| 7 | 3l56 | - | https://www.nature.com/articles/s41598-017-11625-y | Characterization of influenza A viruses with polymorphism in PB2 residues 701 and 702 | 2017 | AWH Chin, NKC Leong, JM Nicholls, LLM Poon- Scientific Reports, 2017 - nature.com | Correlation between the structural predictions and the polymerase activities in 293T cells at 37 C. In order to anticipate the effect of PB2-701 and 702 mutations on surface charge distributions, protein models of PB2-701 and 702 mutants ( PDB ID: 3CW4, 3L56 and 2GMO) were |
| 8 | 3rih | 3uve | https://link.springer.com/article/10.3103/S0027131418050085 | The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures | 2018 | AV Popinako, MY Antonov, EY Bezsudnova- Moscow University, 2018 - Springer | Protein structures from PDB database are marked with asterisk 3RIH (Mycobacterium Abscessus tion involving specific patterns of the distribution of dif- ferent residues in the structure , including their distribu- tion on the solvent-accessible molecular surface and in the protein core |
| 9 | 4p8r | 4lsm | https://www.sciencedirect.com/science/article/pii/S1570963918300220 | Structural studies of glyceraldehyde-3-phosphate dehydrogenase from Naegleria gruberi, the first one from phylum Percolozoa | 2018 | ATP Machado, M Silva, J Iulek- et Biophysica Acta (BBA)-Proteins and, 2018 - Elsevier | cruzi (glicosomal) ( PDB : 4LSM) [12], Trypanosoma brucei (glicosomal) ( PDB : 4P8R ) [13], Leishmania 3PYM), Homarus americanus ( PDB : 1GPD) [46] and Escherichia coli ( PDB : 1GAD) [47 general, they are similar, with some differences in secondary structure elements; RMSD |
| 10 | 2lwk | - | http://pubs.acs.org/doi/abs/10.1021/jp407254m | Prediction of RNA 1H and 13C chemical shifts: a structure based approach | 2013 | AT Frank, SH Bae, AC Stelzer - The Journal of Physical Chemistry …, 2013 - ACS Publications | ... which 1 H and 13 C chemical shifts data were acquired, and a structural description. ... each chemicalshift entry was mapped to local 3D descriptors calculated from PDB coordinates. ... 1 H chemicalshifts for the nuclei corresponding to those in our chemical shift-structure database. ... |