We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3k9w | - | https://www.sciencedirect.com/science/article/pii/S1570963919300469 | Structural and binding studies of phosphopantetheine adenylyl transferase from Acinetobacter baumannii | 2019 | A Gupta, PK Singh, N Iqbal, P Sharma- et Biophysica Acta (BBA, 2019 - Elsevier | PDB ID: 3ND5; 12), HpPPAT ( PDB ID: 3NV7; 13), BpPPAT ( PDB ID: 3K9W ; 14), CbPPAT ( PDB ID: 4F3R; unpublished), PaPPAT ( PDB ID: 3X1J; 15) and MaPPAT ( PDB ID: 5O06 As indicated by the structure of AbPPAT with CoA ( PDB ID: 5YH7), the ligand binding cleft |
| 2 | 6bfu | 6nb6, 6nb7, 6nb3, 6tys, 6q04 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3541361 | Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology-and bioinformatic-based predictions | 2020 | A Grifoni, J Sidney, Y Zhang- -HOST-MICROBE-D, 2020 - papers.ssrn.com | with data about immune epitopes, protein structures , and host responses to virus infections (Pickett et al., 2012) glycoprotein structure ( PDB : 6ACD). The calculated surface of the top 10 amino acid residues Non- structural protein 3b 2 0 Protein 7a 2 0 Protein 9b 2 0 |
| 3 | 3k5p | - | http://033ce13.netsolhost.com/bioinformation/007/97320630007021.pdf | Molecular modeling of human neutral sphingomyelinase provides insight into its molecular interactions | 2011 | AG Dinesh, PS Suresh, C Thirunavukkarasu - , 2011 - 033ce13.netsolhost.com | ... Based on these results, WD repeat-containing protein 5 from Escherichia coli (PDB code: 3EMH)was selected as a ... Furthermore, we have predicted the structure of a ternary complex whichprovides a better understanding of the molecular interactions ... Pcons5 1ZWX 3K5P 3L1W ... |
| 4 | 4o5h | - | http://www.sciencedirect.com/science/article/pii/S0003986117300462 | Structure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway | 2017 | AG Crabo, B Singh, T Nguyen, S Emami - Archives of Biochemistry , 2017 - Elsevier | ... The closest structural homolog to NPADH is sheep liver aldehyde dehydrogenase ALDH1 (PDBID: 1BXS), which catalyzes the conversion of retinal to retinoic ... In a homologous PADH structure from Burkholderia cenocepacia J2315 (BcPADH) (PDB ID: 4O5H), which was recently solved by the Seattle Structural Genomics Consortium and has 49% identity and 65% similarity to PADH, this loop contains the same number of amino acids as NPADH and adopts a different orientation (Fig. 2C)... |
| 5 | 4qtp | - | http://www.sciencedirect.com/science/article/pii/S0378111916305200 | Functional, structural and epitopic prediction of hypothetical proteins of Mycobacterium tuberculosis H37Rv: An in silico approach for prioritizing the targets | 2016 | A Gazi, MG Kibria, M Mahfuz, R Islam, P Ghosh - Gene, 2016 - Elsevier | ... Conformational B cell epitopes of NP_216420.1 (UniProt ID: O07728) predicted from the 3D structure template under PDB ID 4QTP (Crystal structure of an anti-sigma factor antagonist from M. paratuberculosis). ... |
| 6 | 3p96 | - | http://ir.inflibnet.ac.in:8080/jspui/bitstream/10603/224095/3/jbc%202014.pdf | Identification of Novel Drug Target Pathways and Scaffolds to Combat Tuberculosis | 2018 | A Garima - 2018 - ir.inflibnet.ac.in | of Porphyromonas gingivalis into host cells by modulating host cytoskeletal architecture , innate immune of SerB1- and SerB2-modeled proteins over 3FVV and 3P96 , respectively, resulted The superimpositions of SerB1 and SerB2 models over HPSP crystal structure resulted in |
| 7 | 2kok | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07882.x/full | Corynebacterium glutamicum survives arsenic stress with arsenate reductases coupled to two distinct redox mechanisms | 2011 | AF Villadangos, K Van Belle, K Wahni? - Molecular Microbiology, 2011 - Wiley Online Library | ... fold (left) as representative for the ArsC1' subgroup of arsenate reductases (B), and R773 Ec_ArsC (PDB ID 1I9D ... R773 (Ec_ArsC), Vibrio cholerae [Vc_ArsC (VCV511445)], Streptococcus mutans strain UA159 [(Sm_ArsC (SMU_1651)] and Brucella mellitensis 2KOK (Bm_ArsC ... |
| 8 | 3l56 | - | http://vir.sgmjournals.org/content/92/7/1650.short | Influence of PB2 host-range determinants on the intranuclear mobility of the influenza A virus polymerase | 2011 | A Foeglein, EM Loucaides, M Mura? - Journal of General Virology, 2011 - Soc General Microbiol | ... The side chains of residues G590 and Q591 are yellow. (c) Surface electrostatic potential modelling (using Swiss-Prot: red indicates negative charge, blue positive charge) on the 627 domain of PR8 or tPB2 (adapted from PDB 3L56; Yamada et al., 2010). ... |
| 9 | 4qic | - | http://www.annualreviews.org/doi/abs/10.1146/annurev-genet-112414-054813 | General Stress Signaling in the Alphaproteobacteria | 2015 | A Fiebig, J Herrou, J Willett - Annual review of genetics, 2015 - annualreviews.org | ... (f) Structural representation of full-length PhyR in an open conformation bound to NepR(PDB:4QIC). This complex structure evinces an unusual exchange of receiver domain secondaryelements 5-12 (yellow) between adjacent PhyR/NepR complexes in the crystal lattice. ... |
| 10 | 5enu | - | http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005284 | An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins | 2017 | AF Harper, JB Leuthaeuser, PC Babbitt - PLOS Computational , 2017 - journals.plos.org | ... the PFAM family, and structural modelling to create active sites; ultimately structural comparisonsare ...Notably, the invariant Gly, Ser, and Asp of the G(V/I)SxD motif are all in the 5ENU active site, along with the conserved Leu. These distinctive features suggest that, indeed, these two subgroups are functionally distinct.. ... |