We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3RD5 | 2011 | 20 |
| 3UAM | 2011 | 20 |
| 3V7O | 2012 | 20 |
| 4F2N | 2012 | 20 |
| 3EOO | 2008 | 20 |
| 4IX8 | 2014 | 19 |
| 3SDO | 2011 | 19 |
| 6NB3 | 2019 | 18 |
| 3GWC | 2009 | 18 |
| 7JV6 | 2021 | 18 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5woq | - | http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf | In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis | 2018 | YN Joshi, RD Salunkhe - ijiset.com | was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling |
| 2 | 3p0x | - | http://ira.lib.polyu.edu.hk/handle/10397/35473 | Identification of protein-ligand binding site using machine learning and hybrid pre-processing techniques | 2015 | YKG Wong - 2015 - ira.lib.polyu.edu.hk | ... This type is suit- able if no structural information about the target is available. Another one isstructure- ... All this information can be found from the Protein Data Bank (PDB) [6] or Protein Qua-ternary Structure file server (PQS) [7], which show the atomic coordinates and the qua- ... |
| 3 | 3cez | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2009.06680.x/full | Structural and kinetic analysis of an MsrA-MsrB fusion protein from Streptococcus pneumoniae | 2009 | YK Kim, YJ Shin, WH Lee, HY Kim? - Molecular Microbiology, 2009 - Wiley Online Library | ... The Protein Data Bank accession codes for other Msr proteins discussed in this article are as follows: BtMsrA (1FVA), EcMsrA (1FF3), MtMsrA (1NWA), NmMsrA (3BQE, 3BQF, 3BQH), PtMsrA (2J89), BsMsrB (1XM0), BpMsrB (3CEZ, 3CXK) and NgMsrB (1L1D). Kinetic assays. ... |
| 4 | 6wpt | 6wps | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.0c01144 | Structure, Dynamics, Receptor Binding, and Antibody Binding of the Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein in a Viral Membrane | 2021 | YK Choi, Y Cao, M Frank, H Woo, SJ Park- Journal of chemical, 2021 - ACS Publications | The spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) mediates host cell entry by binding to angiotensin-converting enzyme 2 (ACE2) and is considered the major target for drug and vaccine development. We previously built fully glycosylated full-length SARS-CoV-2 S protein models in a viral membrane ... In the cryo-EM structure of the S trimer in the complex with the S309 antibody (PDB ids: 6WPS and 6WPT(51)), S309 interacts with the glycan attached to N343. |
| 5 | 6xk2 | - | https://www.nature.com/articles/s41467-024-50955-0 | Accurate prediction of protein function using statistics-informed graph networks | 2024 | YJ Jang, QQ Qin, SY Huang, ATJ Peter- Nature, 2024 - nature.com | The scores are mapped to color the MgIA 3D structure ( PDB ID: 6IZW) from lower (blue) to higher (red), GDP is shown with sphere in yellow, SO 4 in stick in cyan, and Mg 2+ ion in a ... The activation scores are mapped to the tertiary structures of nine proteins, including ... Tyrosine-protein kinase BTK (TpK-BTK, PDB ID: 6W8I), Ribokinase (PDB ID: 6XK2), alpha-lactalbumin (αLA, PDB ID: 1HFX) |
| 6 | 3qh4 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070724/ | Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling | 2016 | YH Choi, YN Lee, YJ Park, SJ Yoon, HB Lee - BMB reports, 2016 - ncbi.nlm.nih.gov | ... the basis of the Protein Data Bank (PDB) databases reported previously: AfuEst (PDB code: 1jji ...esterase (1qz3), MetEst (2c7b), StoEst (3aik), Mycobacterium marinum esterase (3qh4), PcaEst(3zwq ... was created by homology modeling as the superimposed ribbon structure onto it ... |
| 7 | 7jzl | 7jzn | https://pmc.ncbi.nlm.nih.gov/articles/PMC12308813/ | Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins | 2025 | YF e Silva, HH Fokoue- Journal of Chemical, 2025 - pmc.ncbi.nlm.nih.gov | Such information was related to each PDB -ID, but within the trimeric bound structures , we evaluate whether each protomer has interactions with the ligands by calculating the number of |
| 8 | 3sbx | - | https://www.sciencedirect.com/science/article/pii/S1097276519302606 | (p) ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch | 2019 | YE Zhang, RL Brentsen, T Fuhrer, U Sauer, K Gerdes- Molecular cell, 2019 - Elsevier | marinum showing similarity to the PpnN core domain and determined in the presence of adenosine monophosphate (AMP) ( PDB : 3SBX , Figure S3 Vibrio cholerae and Idomarina baltica, at a similar position to the phosphate of AMP in the M. marinum structure , suggesting that |
| 9 | 3d64 | 3n58 | http://www.sciencedirect.com/science/article/pii/S1047847715000568 | Crystal structures of S-adenosylhomocysteine hydrolase from the thermophilic bacterium Thermotoga maritima | 2015 | Y Zheng, CC Chen, TP Ko, X Xiao, Y Yang… - Journal of structural …, 2015 - Elsevier | ... The Refseq or PDB numbers of these sequences are: T. maritima, AAC01562.1 ... 1B3R;Trypanosoma brucei, 3H9U; M. tuberculosis, 3DHY; B. melitensis, 3N58; B. pseudomallei, 3D64.The secondary structure elements (helices (α) and strands (β)) of tmSAHH are shown above ... |
| 10 | 5vm1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jobm.201800482 | Heterologous expression and biochemical characterization of a thermostable xylulose kinase from Bacillus coagulans IPE22 | 2019 | Y Zhang, C Zhao, Z Ni, M Shao, M Han- Journal of basic, 2019 - Wiley Online Library | was shown in Figure 1. In the 3D structure modeling analysis, Bc-XK showed the highest sequence identity of 35% with the homologue from Brucella ovis ATCC 25840 ( PDB accession number 5VM1 , DOI: 10.2210/pdb5VM1/ pdb ), the confi- dence and structure coverage values |