We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3SDO | 2011 | 16 |
| 7JZM | 2020 | 16 |
| 6WS6 | 2020 | 16 |
| 6BFU | 2017 | 16 |
| 7N8H | 2021 | 15 |
| 4IX8 | 2014 | 15 |
| 3RD5 | 2011 | 15 |
| 3TCQ | 2012 | 14 |
| 7LY2 | 2021 | 14 |
| 3D64 | 2008 | 14 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3enk | - | https://www.nature.com/articles/s41598-019-47591-w | Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum | 2019 | YW Nam, M Nishimoto, T Arakawa, M Kitaoka- Scientific reports, 2019 - nature.com | Here, we focused on structural features of GalE from B. longum JCM1217 (bGalE) The main chain structure of bGalE is similar to those of bacterial and eukaryotic GalEs. C RMSD values (distance cutoff = 2.0 ) of the UDP-GlcNAc complex with hGalE ( PDB ID 1HZJ, ... We built a reliable homology model of BLLJ_1592 (GQME = 0.72 and QMEAN = −2.34) using the SWISS-MODEL server45 with an unpublished structure of GalE from Burkholderia pseudomallei (PDB ID: 3ENK, sequence identity = 42.3%) as a template |
| 2 | 4j07 | - | https://www.sciencedirect.com/science/article/pii/S002235491830306X | Biomedical Applications of Lumazine Synthase | 2018 | Y Wei, P Kumar, N Wahome, NJ Mantis- Journal of, 2018 - Elsevier | Oligomeric State of LS, Quaternary Structure , Organism, PDB ID 16, 17, 18 Mycobacterium leprae 19 S. cerevisiae 20 Schizosaccharomyces pombe 21, 1DI0 2F59; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV |
| 3 | 4j07 | - | https://kuscholarworks.ku.edu/handle/1808/27856 | Strategies to improve the immunogenicity of subunit vaccine candidates | 2018 | Y Wei - 2018 - kuscholarworks.ku.edu | Oligomeric state of lumazine synthase Quaternary structure Organism PDB ID Pentamer 1DI0 2F59 ; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV; 1KYX; 1KYY Decamer Brucella spp |
| 4 | 6nb7 | 6nb4 | https://jvi.asm.org/content/early/2019/12/05/JVI.02015-19.abstract | Molecular mechanism for antibody-dependent enhancement of coronavirus entry | 2019 | Y Wan, J Shang, S Sun, W Tai, J Chen, Q Geng- Journal of, 2019 - Am Soc Microbiol | change of the spike. Future study on the high-resolution cryo-EM structure of MERS- 230 CoV Se trimer complexed with Mersmab1 will be needed to provide detailed structural 231 information for the Mersmab1-triggered conformational changes of MERS-CoV Se. SARS-CoV S-e complexed with S230 mAb (PDB ID: 6NB7). |
| 5 | 3fdz | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355328/ | Molecular dynamics simulation reveals how phosphorylation of tyrosine 26 of phosphoglycerate mutase 1 upregulates glycolysis and promotes tumor growth | 2017 | Y Wang, WS Cai, L Chen, G Wang - Oncotarget, 2017 - ncbi.nlm.nih.gov | ... We then used the crystal structure ( PDB ID: 3FDZ ) as the reference to study the structural deviations of S 0 wt and S 1 phos, because the crystal structure had recorded faithfully the actual binding of 2,3-BPG with PGAM1. ... |
| 6 | 4kam | - | https://www.nature.com/articles/s42003-020-0954-9 | Adaptive laboratory evolution enhances methanol tolerance and conversion in engineered Corynebacterium glutamicum | 2020 | Y Wang, L Fan, P Tuyishime, J Liu, K Zhang- Communications, 2020 - nature.com | Synthetic methylotrophy has recently been intensively studied to achieve methanol-based biomanufacturing of fuels and chemicals. However, attempts to engineer platform microorganisms to utilize methanol mainly focus on enzyme and pathway engineering... The model structure of the wild-type Cgl0653 was constructed with the crystal structure of O-acetyl-L-homoserine sulfhydrylase from Mycobacterium marinum ATCC BAA-535 (PDB ID: 4KAM) as a template (54% sequence identity with Cgl0653) |
| 7 | 3i4e | 3p0x, 3oq8, 3eol, 3e5b | http://www.hindawi.com/journals/bmri/2015/895453/abs/ | Potential Inhibitors for Isocitrate Lyase of Mycobacterium tuberculosis and Non-M. tuberculosis: A Summary | 2015 | YV Lee, HA Wahab, YS Choong - BioMed Research International, 2015 - hindawi.com | ... 1F8M [5]], Escherichia coli [PDB id: 1IGW [6]], Burkholderia pseudomallei [PDB id: 3I4E (paperunpublished ... crystal structure using Ligand Fit module of Discovery Studio 2.1 software (PDB id1F8M ... View at Scopus; V. Sharma, S. Sharma, KHZ Bentrup et al., “Structure of isocitrate ... |
| 8 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi500406h | Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cAMP and cGMP | 2014 | Y Tian, W Cui, M Huang, H Robinson, Y Wan - Biochemistry, 2014 - ACS Publications | ... structure. The atomic model was built with O(39) and refined with REFMAC.(40). The yPDE1 structure was compared with structures in the Protein Data Bank by the online program Dali (http://www.ebi.ac.uk/Tools/structure/dalilite). ... |
| 9 | 4whx | 3u0g | https://www.sciencedirect.com/science/article/pii/S1570963919300494 | Functional characterization of PLP fold type IV transaminase with a mixed type of activity from Haliangium ochraceum | 2019 | YS Zeifman, KM Boyko, AY Nikolaeva- et Biophysica Acta (BBA, 2019 - Elsevier | These results complement our knowledge of the catalytic diversity of transaminases and indicate the need for further research to understand the structural basis of substrate specificity in these enzymes. Abbreviations PDB entry code, 6H65. 2.8. Structure solution and refinement |
| 10 | 3nwo | - | http://www.sciencedirect.com/science/article/pii/S0014579314001033 | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates | 2014 | Y Shinohara, A Miyanaga, F Kudo, T Eguchi - FEBS letters, 2014 - Elsevier | ... method using the Molrep program [16], with the crystal structure of the putative proline iminopeptidase Mycobacterium smegmatis (PDB code: 3NWO) being used ... The resulting coordinates and structure factors have been deposited in the Protein Data Bank (PDB code: 3WMR) ... |