We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LXZ | 2021 | 10 |
| 3NRR | 2010 | 10 |
| 3IDO | 2009 | 10 |
| 7N8I | 2021 | 10 |
| 2KN9 | 2009 | 10 |
| 3IXC | 2009 | 10 |
| 7LXX | 2021 | 10 |
| 3ENK | 2008 | 10 |
| 3MEQ | 2010 | 10 |
| 3QI6 | 2011 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3d64 | - | http://www.sciencedirect.com/science/article/pii/S0925443912002165 | S-adenosyl-L-homocysteine hydrolase and methylation disorders: Yeast as a model system | 2013 | O Tehlivets, N Malanovic, M Visram… - … et Biophysica Acta (BBA …, 2013 - Elsevier | ... 1. AdoMet — a principal methyl group donor and more. Beyond its role in protein synthesisand structure, methionine, after its activation to AdoMet by methionine adenosyltransferase,plays a crucial role in many aspects of cellular metabolism. ... |
| 2 | 3eoo | - | http://www.sciencedirect.com/science/article/pii/S0743731511001948 | Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units | 2012 | A Yaseen, Y Li - Journal of Parallel and Distributed Computing, 2011 - Elsevier | ... PDB #of Res #of Atoms GPU Time L1 hits L1 misses Divergent Branches Sorted (??sec) Unsorted (??sec) Sorted/ Unsorted Sorted Unsorted Sorted Unsorted Sorted Unsorted 1PRB 53 419 49 76 ... 1.05 6,88 5 ,7 80 3,83 9 ,5 00 36 4, 04 8 66 6, 21 7 17 9, 78 4 33 ,5 41 3EOO 4,59 ... |
| 3 | 3gtd | 3tv2, 3rd8, 3rrp, 3qbp, 3ome, 3oc7, 3njb, 3njd, 3myb, 3moy, 3he2, 3h81, 4qfe | http://www.sciencedirect.com/science/article/pii/S0734975015000208 | Stereochemistry of enzymatic water addition to C= C bonds | 2015 | BS Chen, LG Otten, U Hanefeld - Biotechnology Advances, 2015 - Elsevier | ... Entry, Name (EC-number), Sources (PDB-number), Types of reaction, Cofactor, Regio- andstereoselectivity. ... sapiens (3E04) Mycobacterium abscessus (3RRP) Sinorhizobium meliloti (4HGV)Thermus thermophilus (1VDK) Rickettsia prowazekii (3GTD) Mycobacterium tuberculosis ... |
| 4 | 3q8n | - | http://www.sciencedirect.com/science/article/pii/S0734975014001992 | Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications | 2015 | F Steffen-Munsberg, C Vickers, H Kohls, H Land… - Biotechnology …, 2015 - Elsevier | In this review we analyse structure/sequence-function relationships for the superfamily ofPLP-dependent enzymes with special emphasis on class III transaminase. |
| 5 | 4qtp | - | http://www.sciencedirect.com/science/article/pii/S0378111916305200 | Functional, structural and epitopic prediction of hypothetical proteins of Mycobacterium tuberculosis H37Rv: An in silico approach for prioritizing the targets | 2016 | A Gazi, MG Kibria, M Mahfuz, R Islam, P Ghosh - Gene, 2016 - Elsevier | ... Conformational B cell epitopes of NP_216420.1 (UniProt ID: O07728) predicted from the 3D structure template under PDB ID 4QTP (Crystal structure of an anti-sigma factor antagonist from M. paratuberculosis). ... |
| 6 | 3cxk | - | http://www.sciencedirect.com/science/article/pii/S0378111912014242 | Methionine sulfoxide reduction in ciliates: Characterization of the ready-to-use methionine sulfoxide-< i> R</i>-reductase genes in< i> Euplotes</i> | 2013 | N Dobri, EEN Oumarou, C Alimenti, C Ortenzi? - Gene, 2012 - Elsevier | ... The crystallographic structure of the Burkholderia pseudomallei MsrB (PDB ID: 3cxk) was automatically selected by the server as a template since it shows an amino acid sequence identity of 53% and 56% with the MsrB protein of E. raikovi and E. nobilii, respectively. ... |
| 7 | 3lg6 | - | http://www.sciencedirect.com/science/article/pii/S0304416514003171 | Molecular dynamics for computational proteomics of methylated histone H3 | 2014 | C Grauffel, RH Stote, A Dejaegere - Biochimica et Biophysica Acta (BBA)- …, 2014 - Elsevier | ... This analysis is made possible by the substantial amount of structural information available oncomplexes between PHD domains and modified histone tails. ... Protein Data Bank IDs are indicated,and NMR structures are labeled with a (*). Protein name, Ref. ... PDB structure. ... |
| 8 | 3gka | - | http://www.sciencedirect.com/science/article/pii/S0301462213001397 | Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity | 2013 | MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier | ... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ... |
| 9 | 3d5t | 3doc | http://www.sciencedirect.com/science/article/pii/S0301462210002437 | 'Cold spots' in protein cold adaptation: Insights from normalized atomic displacement parameters (< i> B'</i>-factors) | 2010 | A Siglioccolo, R Gerace, S Pascarella - Biophysical chemistry, 2010 - Elsevier | ... Growth temperature of the microorganism sources of the selected proteins were taken from thedatabank DSMZ (http://www.dsmz.de/, Deutsche Sammlung von ... Family, Source a, Growth T (?C) b, Pdb ID c, Res. ... Burkholderia pseudomallei, 40, 3D5T, 2.51, 253/328 (77%), 2, 331. ... |
| 10 | 3gvg | - | http://www.sciencedirect.com/science/article/pii/S0300908412002696 | Crystal structures of triosephosphate isomerase from methicillin resistant< i> Staphylococcus aureus</i> MRSA252 provide structural insights into novel modes of ligand binding and unique conformations of catalytic loop | 2012 | S Mukherjee, A Roychowdhury, D Dutta, AK Das - Biochimie, 2012 - Elsevier | ... Structural homologues to SaTIM in PDB were searched by the BLASTP server [46 ... sequence alignment of amino acid residues of SaTIM (3M9Y) with TIM from Bacillus stearothermophilus (2BTM), Thermotoga maritima (1B9B), Mycobacterium tuberculosis (3GVG), Vibrio marinus ... |