We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3d64 | - | http://pubs.acs.org/doi/abs/10.1021/jp3014332 | Hidden Relationship between Conserved Residues and Locally Conserved Phosphate-Binding Structures in NAD (P)-Binding Proteins | 2012 | CY Wu, YH Hwa, YC Chen, C Lim - The Journal of Physical Chemistry, 2012 - ACS Publications | ... Bank (PDB).2 In the absence of structural data, sequence similarity search tools are useful in annotating protein function and in aiding the design of experiments for further studies. ... the NAD(P)-binding domains in the current PDB. ... |
| 2 | 3q8h | - | http://pubs.acs.org/doi/abs/10.1021/jm5010978 | Development of Inhibitors of the 2 C-Methyl-d-erythritol 4-Phosphate (MEP) Pathway Enzymes as Potential Anti-Infective Agents | 2014 | T Masini, AKH Hirsch - Journal of medicinal chemistry, 2014 - ACS Publications | ... ofhe cocrystal structure of 81 with B. pseudomallei IspF (PDB code 3Q8H, Figure 4) shows that there is no direct interaction of 81 with the catalytic Zn2+ cation, but the presence of the bicyclic aromatic ring, engaged in hydrophobic interactions, probably compensates for this lack, resulting in a strong affinity of 81 or B. pseudomallei IspF. ... |
| 3 | 3meq | - | http://pubs.acs.org/doi/abs/10.1021/jacs.7b12369 | Activity-Related Microsecond Dynamics Revealed by Temperature-Jump Forster Resonance Energy Transfer Measurements on Thermophilic Alcohol | 2018 | MB Vaughn, J Zhang, TG Spiro, RB Dyer- Journal of the, 2018 - ACS Publications | protein motions. figure Figure 1. Structure of ht-ADH in green with NADH and alcohol in cyan. The three tryptophan residues are yellow. This structure was created from an overlap of PDB : 1RJW and 3MEQ . The steady state |
| 4 | 4egf | - | http://pubs.acs.org/doi/abs/10.1021/jacs.5b08968 | A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis | 2015 | H Huang, MS Carter, MW Vetting - Journal of the , 2015 - ACS Publications | ... 5) and (2) an experimentally verified l-xylulose reductase from M. smegmatis (MSMEG_3262;UniProt ID A0QXD6; PDB 4EGF) that shares 44 ... reaction that interconverts d-glyceraldhyde-3Pand dihydroxyacetone phosphate in glycolysis, ie, the active site structure can be ... |
| 5 | 3dah | 3kjr, 3i3r | http://pubs.acs.org/doi/abs/10.1021/ja908558m | Multiparameter screening on slipchip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods | 2009 | L Li, W Du, RF Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications | ... The crystal structure was determined at 2.3 ? resolution (PDBid: 3DAH). ... 37 mM sodium citrate, pH 5.5) yielding crystals in space group P4 3 2 1 2. We obtained a data set at 1.83 ? with crystals produced by scaling up, and the structural determination and PDB deposition are in ... |
| 6 | 3d6b | 3ii9 | http://pubs.acs.org/doi/abs/10.1021/ja908555n | User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments | 2009 | L Li, W Du, R Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications | ... These crystals yielded a structure of 2.2 ? resolution and space group P2 1 2 1 2 1 (PDBid3D6B). Without ... manuscript. We thank Bart Staker for checking the structure of glutaryl-CoA dehydrogenase for PDB deposition. Supporting Information ... |
| 7 | 3oib | - | http://pubs.acs.org/doi/abs/10.1021/id500033m | Unraveling cholesterol catabolism in Mycobacterium tuberculosis: the ChsE4-ChsE5 α2β2 acyl-CoA dehydrogenase initiates β-oxidation of 3-oxo-cholest-4-en-26-oyl … | 2015 | M Yang, R Lu, KE Guja, MF Wipperman… - ACS Infectious …, 2015 - ACS Publications | ... he RMSD value between ChsE4 and 3OIB is 1.718 Å with 831 α-carbons aligned; the RMSD value between ChsE4 and 3MDE is 2.362 Å with 942 α-carbons ... |
| 8 | 3js4 | - | http://pubs.acs.org/doi/abs/10.1021/cr4005296 | Superoxide dismutases and superoxide reductases | 2014 | Y Sheng, IA Abreu, DE Cabelli, MJ Maroney… - Chemical …, 2014 - ACS Publications | ... Figure 2. Stereo ribbon diagrams of SODs and SORs: (A) CuZnSOD (PDB code: 1PU0); (B) NiSOD (PDB code: 1T6U); (C) MnSOD (PDB code: 3LSU); (D) FeSOD (PDB code: 3JS4) ... |
| 9 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci5005898 | Large-scale Mining for Similar Protein Binding Pockets: With RAPMAD Retrieval on the Fly Becomes Real | 2014 | T Krotzky, C Grunwald, U Egerland… - Journal of chemical …, 2014 - ACS Publications | ... Again, we searched the PDB for proteins that bind pemetrexed and found six structures: four thymidylate synthases (1JUJ, 1JU6, 3K2H, 4FQS), a folate receptor (4KN2), and a pteridine reductase (2X9G). By culling this set of proteins using PISCES ... |
| 10 | 3inn | 4ed4 | http://pubs.acs.org/doi/abs/10.1021/ci500553a | Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity | 2014 | T Krotzky, T Rickmeyer, T Fober… - Journal of chemical …, 2014 - ACS Publications | ... To set up a more challenging task with respect to conformational and structural diversity, we ... serverPISCES of the Dunbrack lab(35) was employed, which kept only PDB structures that agreed ... thesequence identity does not exceed 25%, the method of structure determination is ... |