We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | - | http://link.springer.com/article/10.1007/s00018-016-2177-2 | The M. tuberculosis HAD phosphatase (Rv3042c) interacts with host proteins and is inhibited by Clofazimine | 2016 | S Shree, AK Singh, R Saxena, H Kumar - Cellular and Molecular , 2016 - Springer | ... SanyalAffiliated withBiochemistry Division, CSIR-Central Drug Research Institute; and 1 more: ,Ravishankar RamachandranAffiliated withMolecular and Structural Biology Division ... Homologymodels of MtSerB2 based on M. avium SerB (PDB code 3P96) were generated ... |
| 2 | 2kwl | 2lol, 2lky, 2l3v | http://link.springer.com/10.1140/epje/i2013-13062-7 | Protein packing defects heat up interfacial water | 2013 | MB Sierra, SR Accordino, JA Rodriguez-Fris? - The European Physical Journal E, 2013 - Springer | ... 2BZT, 2eyz, 2FDQ, 2GEQ, 2jqx, 2JQY, 2JU6, 2K0P, 2K4Q, 2KJG, 2KV4, 2KWD, 2KWL, 2L3V, 2L4V ... ex- plicitly the situation for one of the proteins studied: the p53 protein (PDB 2GEQ ... this molecule represents one of the largest dehydron clusters in the Protein Data Bank [9]. From ... |
| 3 | 3uam | - | http://library.wur.nl/WebQuery/wurpubs/fulltext/420143 | Lytic polysaccharide monooxygenases from Myceliophthora thermophila C1 | 2017 | M Frommhagen - 2017 - library.wur.nl | Furthermore, many more variations exist in the xylan structure , such as ester-linked ferulic and p-coumaric acid substitutions than can be further crosslinked to lignin (Section Structures are modified and based on Scheller et al Structural units are shown in the legend on the top ..Table 1.3 Crystal structures of AA9 and AA10 LPMOs published until the end of 2013. CBM33 3UAM Burkholderia pseudomallei AA10 2011 SSGCID |
| 4 | 3gvg | 3krs | http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=4202&context=etd#page=63 | Chapter 3. Triosephosphate Isomerase Structure Space Diversity: oligomerization, dynamics, and functionality - an evolutionary perspective. | 2013 | AR Katebi, RL Jernigan - Building and simulating protein machines, 2013 - lib.dr.iastate.edu | ... TIM Structure Database: We have downloaded 121 TIM structures from the Protein Data Bank (PDB)(www. ... 105 PDB ids of the TIM structures that are used to extract these 263 chains ... 2VFF 2VFG 2VFH 2VFI 2VOM 2VXN 2WSQ 2X1R 2X1S 2X1T 2X1U 2YPI 3GVG 3KRS 3M9Y ... |
| 5 | 3pm6 | - | http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=4202&context=etd#page=25 | Chapter 2. Aldolase oligomerization relates to specific dynamics essential to carry out its function | 2013 | AR Katebi, RL Jernigan, LHB Center - Building and simulating protein machines, 2013 - lib.dr.iastate.edu | ... used in the multiple sequence alignment, we use subunits from the following PDB Ids: B. anthracis?3Q94; C. immitis?3PM6; C. jejune ... software suite [13-15] to model the missing loop regions of the FBA structures retrieved from the Protein Data Bank [16 ... E. coli FBA: PDB Id?1ZEN ... |
| 6 | 3o0h | - | http://krishikosh.egranth.ac.in/handle/1/94711 | Structure function studies of enzymes involved in scavenging ROS in Oryza sativa to avoid abiotic stress | 2015 | B Pani - 2015 - krishikosh.egranth.ac.in | ... analysis against PDB (http://www.rcsb.org/) to identify suitable templates for ... The pair-wise 3-D structural alignment and RMSD of the equivalent C atoms, of the model and template was performed using MATRAS (MArkovianTRAnsition of Structure evolution) web ... |
| 7 | 4qtp | - | http://kjvr.org/upload/2015/06/25/20150625103448248200.pdf | Mycobacterium avium subsp. paratuberculosis 감염 초기 개체 검출을 위한항원 탐색 및 특성 분석 | 2015 | 박홍태， 박현의， 신민경， 조용일， 유한상 - Korean J Vet Res, 2015 - kjvr.org | ... MAP의 MAP0380 유전자가 coding하고 있는 anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... 백질은 MAP1204의p60 domain으로 나타났는데(PDB ID: 3i86, TM-score: 0.547), sequence identity가 100 ... |
| 8 | 3h7f | - | http://jxb.oxfordjournals.org/content/62/10/3501.short | In vivo protein tyrosine nitration in Arabidopsis thaliana | 2011 | J Lozano-Juste, R Colom-Moreno? - Journal of experimental botany, 2011 - Soc Experiment Biol | ... protein models were generated by homology modelling at the SWISS-MODEL workspace (Arnold et al., 2006) using the coordinates of GAPDH from rat (PDB code 2VYN), serine hydroxymethyltransferase from Mycobacterium tuberculosis (PDB code 3H7F), transketolase ... |
| 9 | 3v7o | 5dvw | http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005937 | The Ebola virus VP30-NP interaction Is a regulator of viral RNA synthesis | 2016 | RN Kirchdoerfer, CL Moyer, DM Abelson - PLoS , 2016 - journals.plos.org | ... the interactions of Ebola, Sudan and Marburg virus VP30 with NP using in vitro biochemistry,structural biology and cell ... here, we further compared our structures to the Reston ebolavirus(RESTV) VP30 CTD (3V7O.pdb [12]) and a more recently determined structure of the ... |
| 10 | 4jpd | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184961 | SAXS and stability studies of iron-induced oligomers of bacterial frataxin CyaY | 2017 | M Fekry, W Alshokry, P Grela, M Tchrzewski- PloS one, 2017 - journals.plos.org | ... The crystal structure of the CyaY monomer ( PDB entry 1EW4) was used for building a model, which was assumed to be a ... The ratio between the emission intensities at 350 nm and 330 nm (F350/F330) was used to track the structural changes with increasing temperature. ... |