SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3enk - http://journals.cambridge.org/abstract_S003118201400136X UDP-galactose 4′-epimerase from the liver fluke, Fasciola hepatica: biochemical characterization of the enzyme and identification of inhibitors 2014 VL ZINSSER, S LINDERT, S BANFORD… - …, 2014 - Cambridge Univ Press ... These results demonstrate that, despite the structural and biochemical similarities of FhGALEand HsGALE, it is possible to discover compounds which preferentially inhibit ... pymol.org) to thesubunits of Burkholderia pseudo- mallei GALE structure (PDB ID: 3ENK) and NAD+ ...
2 2kn9 - http://journal.iisc.ernet.in/index.php/iisc/article/view/4461 Redox Proteins of Mycobacterium tuberculosis 2014 S Phulera, M Akif, AA Sardesai? - Journal of the Indian Institute of Science, 2014 - journal.iisc.ernet.in ... The individual structures shown are (A) NrdH, pdb id: 4HS1, (B) FurB, pdb id: 2O03, (C) DipZ,pdb id: 2HYX, (D) FcoT, pdb id: 2PFC, (E) AhpD, pdb id: 1KNC, (F) Mycoredoxin, pdb id: 2LQQ, (G) Rubedoxin C with Zinc atom shown as sphere, pdb id: 2KN9, (H) TrxC, pdb id: 1LU4 ...
3 3v8h - http://journal.frontiersin.org/article/10.3389/fcimb.2017.00266/abstract Inactivation of the Thymidylate Synthase thyA in Non-typeable Haemophilus influenzae Modulates Antibiotic Resistance and Has a Strong Impact on Its 2017 I Rodrguez-Arce, S Mart, B Euba- Frontiers in cellular, 2017 - journal.frontiersin.org Antibacterial treatment with cotrimoxazol (TxS), a combination of trimethoprim and sulfamethoxazole, generates resistance by, among others, acquisition of thymidine auxotrophy associated with mutations in the thymidylate synthase gene thyA, which can modify the biology ...
4 4odj - http://jb.oxfordjournals.org/content/160/6/355.short Characterization and redox regulation of Plasmodium falciparum methionine adenosyltransferase 2016 J Pretzel, M Gehr, M Eisenkolb, L Wang - Journal of , 2016 - Jpn Biochemical Soc ... The structure of PfalMAT was modelled according to the crystal structures of MAT2A fromHomo sapiens (PDB no. 2p02) and Cryptosporidium hominis (PDB no. 4odj) using theSWISS-MODEL automated comparative protein-modelling server (36). ...
5 3kcq - http://jb.oxfordjournals.org/content/154/6/569.short Structures and reaction mechanisms of the two related enzymes, PurN and PurU 2013 G Sampei, M Kanagawa, S Baba? - Journal of Biochemistry, 2013 - Jpn Biochemical Soc ... The structure of PurN from A. phagocytophilum HZ (PDB ID: 3KCQ) is also similar to those of PurNs described above. ... 3A and B). PurNs from M. tuberculosis (10) and A. phagocytophilum HZ (PDB ID: 3KCQ) also form the same types of dimers as AaPurN and StPurN. ...
6 3o0m - http://jb.asm.org/content/early/2017/06/14/JB.00304-17.abstract The DNA repair repertoire of Mycobacterium smegmatis FenA includes the incision of DNA 5'flaps and the removal of 5'adenylylated products of aborted nick ligation 2017 ML Uson, S Ghosh, S Shuman- Journal of bacteriology, 2017 - Am Soc Microbiol MSMEG_5871 (Rv0759c) has not been characterized. MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted.
7 3tmg - http://jb.asm.org/content/early/2016/12/16/JB.00746-16.abstract A conserved ABC transport system regulated by the general stress response pathways of Alpha-and Gammaproteobacteria 2016 J Herrou, JW Willett, DM Czy, G Babnigg - Journal of , 2016 - Am Soc Microbiol ... We included sequences of class I PBPs which have been co-crystallized with betaine-related ligands in our analysis, including: Archaeoglobus fulgidus ProX (PDB IDs: 1SW1, 1SW2, 1SW4 ... 1R9Q) (56), and Borrelia burgdorferi ProX (PDB ID: 3TMG) ...
8 3tmg - http://jb.asm.org/content/199/5/e00746-16.short Conserved ABC Transport System Regulated by the General Stress Response Pathways of Alpha-and Gammaproteobacteria 2017 J Herrou, JW Willett, DM Czy, G Babnigg - Journal of , 2017 - Am Soc Microbiol ... meliloti ChoX (PDB IDs 2REG and 2RIN) (37, 38) and EhuB (PDB ID 2Q88) (39), E. coli ProX(PDB IDs 1R9L and 1R9Q) (40), and Borrelia burgdorferi ProX (PDB ID 3TMG). ... Residue numberingstarts with the first residue present in the corresponding structure in the PDB. ...
9 3o0m - http://jb.asm.org/content/199/17/e00304-17.short The DNA Repair Repertoire of Mycobacterium smegmatis FenA Includes the Incision of DNA 5 Flaps and the Removal of 5 Adenylylated Products of Aborted Nick 2017 ML Uson, S Ghosh, S Shuman - Journal of bacteriology, 2017 - Am Soc Microbiol ... IMPORTANCE Structure -specific DNA endonucleases are implicated in bacterial DNA replication, repair, and recombination, yet there is scant knowledge ... We discuss the properties of mycobacterial FenA in light of insightful structural studies of eukaryal flap endonucleases (11 ... MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted.
10 5dwn - http://jb.asm.org/content/199/13/e00125-17.short Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex 2017 EJ Loveridge, C Jones, MJ Bull, SC Moody - Journal of , 2017 - Am Soc Microbiol ... protein [37], including conservation of the bleomycin-binding regions), phosphinothricinN-acetyltransferase (36% identical to phosphinothricin N-acetyltransferase from Brucella ovis[GenBank accession number WP_006155257; PDB accession number 5DWN], with significant ...