We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ftp | 3f9i, 3grp | http://jb.asm.org/content/198/3/463.short | Dissecting the structural elements for the activation of -ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae | 2016 | J Hou, H Zheng, M Chruszcz - Journal of , 2016 - Am Soc Microbiol | ... All enzymes in the active state (shown in gray with PDB accession numbers 1Q7B, 1UZN, 2C07, 2P68, 2UVD, 3FTP, 3LYL, 3OP4, 3RRO, 3OSU, and 4AFN) share the same open conformation in the cofactor binding site, while all the enzymes in the inactive state (shown in blue with PDB accession numbers 1I01, 1UZL, 2NTN, 3F9I, 3GRP, and 3TZC) have disordered ... |
| 2 | 3tmg | - | http://jb.asm.org/content/197/21/3378.short | Mechanistic insight into trimethylamine N-oxide recognition by the marine bacterium Ruegeria pomeroyi DSS-3 | 2015 | CY Li, XL Chen, X Shao, TD Wei, P Wang - Journal of , 2015 - Am Soc Microbiol | ... The extended loop comprising the metal ion binding site is colored orange. The PDBcode of each structure is shown. ... TmoX, green; 2REG, cyan; 3TMG, magenta; 3L6H, yellow;1R9L, salmon; 3PPP, light blue; 3R6U, slate; 1SW2, orange. ... |
| 3 | 3hhe | - | http://jb.asm.org/content/195/9/2101.short | A genomic signature and the identification of new sporulation genes | 2013 | AB Abecasis, M Serrano, R Alves, L Quintais… - Journal of Bacteriology, 2013 - Am Soc Microbiol | Supplemental Material: B: structure based alignment between the YlzA protein and a putative ribose-5-phosphate isomerase from Bartonella henselae (pdb code 3HHE). Note that that the first 20 residues of YlzA do not align with the B. henselae protein. |
| 4 | 2khp | - | http://jb.asm.org/content/192/19/4963.short | Staphylococcus aureus NrdH redoxin is a reductant of the class Ib ribonucleotide reductase | 2010 | I Rabinovitch, M Yanku, A Yeheskel? - Journal of Bacteriology, 2010 - Am Soc Microbiol | ... The C. ammoniagenes NrdH X-ray structure (PDB accession number 1R7H) (39) was the best result, followed by the Brucella melitensis glutaredoxin nuclear magnetic resonance (NMR) structure (PDB accession number 2KHP) and the E. coli NrdH X-ray structure (PDB ... |
| 5 | 3tf6 | - | http://itempdf74155353254prod.s3.amazonaws.com/6159143/DLSCORE__A_Deep_Learning_... | DLSCORE: A Deep Learning Model for Predicting Protein-Ligand Binding Affinities | 2018 | M Hassan, DC Mogollon, O Fuentes, S Sirimulla - 2018 - .s3.amazonaws.com | In designing DLSCORE architecture , we divided the entire method into two parts 2 PDB IDs 4rqv, 4tkb, 1met, 5c5t, 3p8p, 2iuz, 4kfq, 3ifl, 4p6c, 1oyt, 4ibg, 3uri, 3t01, 1o5e, 3qgy, 3kgu, 2h21, 3agl, 3n7a, 1qkt, 1o2j, 1azm, 1afk, 1g54, 3nu3, 2yhw, 4mme, 2f94, 3vha, 3tf6 , 2pvj, 1fkb |
| 6 | 3eoo | - | http://is.muni.cz/th/256262/fi_m/thesis.pdf | Computational Methods for Detecting Ligand Accessible Pathways | 2012 | L Pravda - 2012 - is.muni.cz | ... Regarding the development of computers and the rapid growth of data in worldwide databases such as the Protein Data Bank [1], there have been demands on partial substitution of chemical experiment by computational models. ... |
| 7 | 3h81 | 3njd, 3qk8, 3qka, 3q1t, 3pe8, 3p85, 3p5m, 3ome, 3oc7, 3myb, 3moy, 3he2 | http://iris.lib.neu.edu/chemistry_diss/57/ | Computational studies of enzyme function and dynamics | 2012 | P Yin - 2012 - iris.lib.neu.edu | ... Page 20. 19 List of Abbreviations Abbreviation Meaning CSA Catalytic Site Atlas PDB Protein Data Bank THEMATICS Theoretical Microscopic Titration Curves POOL Partial Order Optimal Likelihood ? Angstr?ms ?C Degrees Celsius ESR Electron Spin Resonance NMR ... |
| 8 | 3ijp | - | http://ir.inflibnet.ac.in:8080/jspui/handle/10603/82176 | Cloning overexpression purification and characterization of DAPB gene encoding dihydrodipicolinate reductase of pseudomonas aeruginosa PAO1 | 2016 | V Anand - 2016 - ir.inflibnet.ac.in | ... preliminary crystallization reports have been published for Staphylococcus aureus (Dommarajuet al., 2010) and Bartonella henselae (PDB code 3IJP) as well. ... biosynthesis enzyme from P.aeruginosa PAOl is an essential step to finally determine its 3-D structure and can ... |
| 9 | 3ido | - | http://ir.inflibnet.ac.in:8080/jspui/handle/10603/79576 | Structure function relationship of phosphatases from Vibrio choleraeo395 | 2016 | S Nath - 2016 - ir.inflibnet.ac.in | ... 1Z12) [5], mouse RPTPA (PDB: 2P4U) [6], yeast LTP1 (PDB: 1D1P) [7] and protozoan parasiteEntamoeba histolytica EhPtp (PDB: 3IDO) [8] are ... Com- parison of the VcLMWPTP-1 structureand surface properties with similar structures in the PDB illuminates its ... |
| 10 | 3kw3 | - | http://ir.inflibnet.ac.in:8080/jspui/handle/10603/67480 | Computational approach on drug targeted proteins in streptococcus pneumoniae Molecular modelling inhibitor design and docking studies | 2016 | TM Reddy - 2016 - ir.inflibnet.ac.in | ... Sequence alignment of Sp-AIr model with crystal structure alanine racemase (1SFT) based onsequence ... Air, indicates it closely related with 1SFT compare with other PDB's (2SFP, ... 2DY3 Air,1 SFT 2SFP 1EPV 1XQK 3HA1 2VD9 2VD8 3HUR ----- 3COS 3KW3 1RCQ 20D0 I ... |