We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6NB3 | 2019 | 14 |
| 3D64 | 2008 | 14 |
| 3GWC | 2009 | 14 |
| 6NB8 | 2019 | 14 |
| 3SWO | 2011 | 14 |
| 3CEZ | 2008 | 13 |
| 5DVW | 2015 | 13 |
| 7JV6 | 2021 | 13 |
| 3IML | 2009 | 13 |
| 4O3V | 2014 | 13 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ege | - | http://www.sciencedirect.com/science/article/pii/S1570963916302278 | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro | 2017 | VN Are, A Kumar, S Kumar, VD Goyal, B Ghosh - et Biophysica Acta (BBA , 2017 - Elsevier | ... are lacking with literature reports of either only structural data (PDB entries; 1WN1, 1WY2, 3Q6D,2IW2, 4EGE) or only ... for this was prepared by Chainsaw [26] using the XPDxc protein sequenceand the structure of a putative XPD from Thermococcus sibiricus (PDB: 4FKC) [8 ... |
| 2 | 3s6d | - | http://www.sciencedirect.com/science/article/pii/S1570963916301844 | Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei | 2016 | AA Lopez-Zavala, JS Carrasco-Miranda - et Biophysica Acta (BBA , 2016 - Elsevier | ... Glycolysis is one of the most regulated metabolic pathways, however little is known about thestructural mechanisms for its regulation in non-model ... Using the DALI server [53] to look for similar structures, the root mean square deviation (RMSD) for backbone carbons between LvTIM and...P. falciparum (1WOB) 1.5 A, Coccidioides immitis (3S6D) 2.1 A |
| 3 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S1570963916300607 | Transition of phosphopantetheine adenylyltransferase from catalytic to allosteric state is characterized by ternary complex formation in Pseudomonas aeruginosa | 2016 | R Chatterjee, A Mondal, A Basu, S Datta - Biochimica et Biophysica Acta ( , 2016 - Elsevier | ... 5-phosphosulfate [PDB ID: 3OTW, 3NV7] [29] and Burkholderia pseudomallei in complex withhydrolyzed dPCoA [PDB ID: 3K9W] [30]. ... was solved using PHASER [38] and by utilizing E. coliphosphopantetheine adenylyltransferase (1HIT chain A) as a starting structure. ... |
| 4 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S1570963914001836 | Crystal structure of serine acetyl transferase from< i> Brucella abortus</i> and its complex with coenzyme A | 2014 | S Kumar, N Kumar, N Alam, S Gourinath - Biochimica et Biophysica Acta ( , 2014 - Elsevier | ... max SAT [10] have been previously published. The coordinates of a crystal structure of SAT from Brucella melitensis has also been deposited at the Protein Data Bank (PDB code: 3MC4). SATs from E. coli, B. melitensis, H. influenzae ... |
| 5 | 3eiy | - | http://www.sciencedirect.com/science/article/pii/S1570963914001095 | Asn112 in< i> Plasmodium falciparum</i> glutathione S-transferase is essential for induced reversible tetramerization by phosphate or pyrophosphate | 2014 | I Quesada-Soriano, C Barn, R Tllez-Sanz - et Biophysica Acta (BBA , 2014 - Elsevier | ... the alignment between one of the docking poses for the binding of pyrophosphate to the PfGST tetramer near the Asn112–Lys117 closed-square pattern and three of the pyrophosphatase structures (3Q4W from Thermococcus thioreducens, 3EIY from Burkholderia pseudomallei and 2AUU/1I6T from E. coli), is suspiciously good. ... |
| 6 | 4lsm | - | http://www.sciencedirect.com/science/article/pii/S1570963914000296 | Biochemical characterisation of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from the liver fluke, Fasciola hepatica | 2014 | VL Zinsser, EM Hoey, A Trudgett, DJ Timson - Biochimica et Biophysica …, 2014 - Elsevier | ... other parasites, for example Plasmodium falciparum (PDB: 1YWG [52]; rmsd 1.226 Å over 8358equivalent atoms) Trypanosoma brucei (PDB: 2X0N, [53]; rmsd 2.009 Å over 8522 equivalentatoms) and Trypanosoma cruzi (PDB: 4LSM, note that this structure only contains ... |
| 7 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913004147 | Structural and biochemical analyses of< i> Microcystis aeruginosa</i> O-acetylserine sulfhydrylases reveal a negative feedback regulation of cysteine biosynthesis | 2014 | M Lu, BY Xu, K Zhou, W Cheng, YL Jiang? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2014 - Elsevier | ... The sequences are (PDB codes in parentheses) Mycobacterium tuberculosis OASS (2Q3D), Haemophilus influenzae OASS (1Y7L), Salmonella typhimurium OASS (1OAS), Mycobacterium marinum Atcc Baa-535 OASS (3RR2), Thermotoga maritima OASS (3FCA), Arabidopsis ... |
| 8 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913003543 | Biochemical properties of nematode< i> O</i>-acetylserine (thiol) lyase paralogs imply their distinct roles in hydrogen sulfide homeostasis | 2013 | R Vozdek, A Hn?zda, J Krijt, L ?er?, V Ko?ich - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... First, their amino acid sequences, together with sequences of OAS-TL (PDB ID: 1D6S, 1FCJ, 1O58, 1VE1, 1Y7L, 1Z7W, 2EGU, 2JC3, 2PQM, 2Q3D, 2V03 and 3RR2) and CBS (PDB ID: 1JBQ and 3PC3) were aligned using MUSCLE 3.8.31 [23]. ... |
| 9 | 4iz9 | - | http://www.sciencedirect.com/science/article/pii/S1570963913002288 | Mechanistic features of< i> Salmonella typhimurium</i> propionate kinase (TdcD): Insights from kinetic and crystallographic studies | 2013 | S Chittori, DK Simanshu, S Banerjee? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... The recently deposited structure of Mycobacterium avium acetate kinase (PDB ID: 4IZ9; unpublished results) determined in complex with succinic acid–APC (a nucleotide analog) conjugate also shows a bound EDO at the proposed SCFA-II site ( Supplementary Fig. S1) consistent with the conserved nature of ligand binding mechanism in acetokinase family of enzymes ... |
| 10 | 3sdo | - | http://www.sciencedirect.com/science/article/pii/S157096391300037X | Halogen bonding at the ATP binding site of protein kinases: Preferred geometry and topology of ligand binding | 2013 | J Pozna?ski, D Shugar - Biochimica et Biophysica Acta (BBA)-Proteins and ?, 2013 - Elsevier | ... bonding mode occurs to the p-loop region (Arg43-Phe54 in CK2?) in 1 J91, 1ZLT, 2GU8, 2UW8, 2X6D 3NGA 3SDO, frequently accompanying ... Thus, the side-chain carboxyl of Asp (PDB IDs: 1ZOH, 3KXG, 1Q4L, 1FVT, 1UV5, 3ZZ2), a backbone carbonyl of Gly (PDB IDs: 2XP2 ... |