We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3DAH | 2008 | 13 |
| 4GIE | 2012 | 13 |
| 5DVW | 2015 | 13 |
| 3CXK | 2008 | 13 |
| 4O3V | 2014 | 13 |
| 3MEN | 2010 | 12 |
| 3L56 | 2010 | 12 |
| 3MD7 | 2010 | 12 |
| 3KHW | 2010 | 12 |
| 3I4E | 2009 | 12 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3dpi | - | http://www.sciencedirect.com/science/article/pii/S1476927116301128 | Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4 | 2016 | M Gupta, R Chauhan, Y Prasad, G Wadhwa - Biology and Chemistry, 2016 - Elsevier | ... Homology based protein structure prediction employs submission of query protein sequenceto BLASTp against PDB database for identifying ... 3DPI, 2PZ8 and 1NSY. ... The dimensions of bindingspace on three dimensional structure of protein were identified in DockBlaster itself. ... |
| 2 | 3laa | - | http://www.sciencedirect.com/science/article/pii/S1438422114001696 | A domain dictionary of trimeric autotransporter adhesins | 2014 | J Bassler, BH Alvarez, MD Hartmann… - International Journal of …, 2014 - Elsevier | ... Name, Description, Topological crossover, PDB. Anchor, Trimeric, 12-stranded outermembrane β-barrel, –, 2gr7. Stalk, Slender segment of predominantly coiled-coil structure, –, ...Long neck, Neck variant of 22 residues length, 120° cw, 3laa. ... |
| 3 | 3laa | - | http://www.sciencedirect.com/science/article/pii/S1438422114001349 | Haemophilus influenzae surface fibril (Hsf) is a unique twisted hairpin-like trimeric autotransporter | 2014 | B Singh, T Al Jubair, M Mörgelin, A Sundin… - International Journal of …, 2014 - Elsevier | ... The templates are presented as Hsf amino acids (PDB code of template: identity/similarity, gap),0136 ... 1863–2023 (1s7m: 73/79, 3), 2024–2143 (2qih: 11/23, 0), 2144–2315 (3laa: 15/22 ... A domain close to the C-terminal (2144–2315 aa) was constructed from PDB:3laa with low identity, but having a high local similarity. ... |
| 4 | 3k2h | - | http://www.sciencedirect.com/science/article/pii/S1368764615000540 | Inside the biochemical pathways of thymidylate synthase perturbed by anticancer drugs: Novel strategies to overcome cancer chemoresistance | 2015 | L Taddia, D D'Arca, S Ferrari, C Marraccini - Drug Resistance , 2015 - Elsevier | The binding sites of other folate analogs (such as methotrexate) have been studied with TS isolated from other organisms (PDB IDs: 3K2H, 1AXW) and all share the same binding site.. |
| 5 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S1359511316300393 | A computational integrating kinetic study on the flexible active site of human acetaldehyde dehydrogenase 1 | 2016 | Y Xu, J Lee, HS Yang, ZR L, H Mu, JM Yang - Process , 2016 - Elsevier | ... In the first step, binding pocket residues were calculated based on the 3D structure of ALDH1via the Pck pocket ... We found 25 template PDB structures (1a4s, 1bxs, 1euh, 1o04, 1t90, 1uxt,1uzb, 1wnd, 2d4e, 2imp, 2j6l, 2o2p, 2ve5, 2w8n, 3b4w, 3ed6, 3ek1, 3i44, 3ifg, 3jz4 ... |
| 6 | 3qh4 | 3s4k | http://www.sciencedirect.com/science/article/pii/S1286457912002110 | Cytosolic lipid inclusions formed during infection by viral and bacterial pathogens | 2012 | M Stehr, AA Elamin, M Singh - Microbes and Infection, 2012 - Elsevier | ... Furthermore the three-dimensional structures of the esterases Rv0045c (PDB 3P2M) [48], Rv1847 (PDB 3S4K), and LipW (3QH4) from M. tuberculosis have been determined, but unfortunately it is not known whether these enzymes are involved in TAG hydrolysis. 5.5. ... |
| 7 | 3hgb | - | http://www.sciencedirect.com/science/article/pii/S1097276515004529 | Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens | 2015 | JGM Rack, R Morra, E Barkauskaite, R Kraehenbuehl… - Molecular cell, 2015 - Elsevier | ... SpyGcvH-L structure is shown in black and canonical GcvH of cattle (PDB: 3KLR), pea (PDB: 1DMX), and M. tuberculosis (PDB: 3HGB) in orange, green, and yellow, respectively. Residue numbers for GcvH-L are given. ... |
| 8 | 3sbx | - | http://www.sciencedirect.com/science/article/pii/S1097276515000477 | Proteasomal Control of Cytokinin Synthesis Protects Mycobacterium tuberculosis against Nitric Oxide | 2015 | MI Samanovic, S Tu, O Novák, LM Iyer, FE McAllister… - Molecular cell, 2015 - Elsevier | ... The crystal structure of the Rv1205 ortholog in the close M. tuberculosis relative Mycobacteriummarinum (M. marinum) was previously crystallized (Protein Data Bank [PDB] ID: 3SBX) in aneffort by the Seattle Structural Genomics Center for Infectious Disease ... |
| 9 | 3hhe | - | http://www.sciencedirect.com/science/article/pii/S109332631730356X | In silico identification of inhibitors of ribose 5-phosphate isomerase from Trypanosoma cruzi using ligand and structure based approaches | 2017 | V de VC Sinatti, LPR Baptista, M Alves-Ferreira - Journal of Molecular , 2017 - Elsevier | ... Abbreviations: LB, Ligand-Based pharmacophore hypothesis; SB, Structure -Based pharmacophore hypothesis. ... bound to R5P substrate ( PDB ID: 3K7S) and bound to the 4PEH ( PDB ID: 3K8C) [12 ... as query and the 1XTZ (identity of 46%), 1LK7 (identity of 42%), 3HHE (identity ... |
| 10 | 3men | - | http://www.sciencedirect.com/science/article/pii/S1093326315300668 | Homology modeling of parasite histone deacetylases to guide the structure-based design of selective inhibitors | 2015 | J Melesina, D Robaa, RJ Pierce, C Romier - Journal of Molecular , 2015 - Elsevier | ... Wizard (Schrdinger Inc.) by adding hydrogen atoms, defining the protonation states of residuesand minimising the structure to remove steric ... Number, Organism/protein name, Abbreviation,PDB ID. ... 10, Burkholderia pseudomallei acetylpolyamine aminohydrolase, BpAPAH, 3MEN ... |