We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3IXC | 2009 | 10 |
| 6XDH | 2020 | 10 |
| 4DZ4 | 2012 | 10 |
| 3QI6 | 2011 | 10 |
| 3GKA | 2009 | 10 |
| 3P0Z | 2010 | 10 |
| 3UVE | 2011 | 10 |
| 5CY4 | 2015 | 10 |
| 7LXX | 2021 | 10 |
| 3ENK | 2008 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4g50 | 4ggq | http://www.sciencedirect.com/science/article/pii/S0968089616306320 | Development, synthesis and structureactivity-relationships of inhibitors of the macrophage infectivity potentiator (Mip) proteins of Legionella pneumophila and | 2016 | F Seufert, M Kuhn, M Hein, M Weiwad, M Vivoli - Bioorganic & Medicinal , 2016 - Elsevier | ... Structural comparison between BpMip and LpMip showed a high homology in the PPIase domain. ...A (left) and region B (right) of lead compound CJ168 (shown in orange in PDB structure 4G503 ). The ... In fact, from the BpMip crystal structures and the LpMip docking modes, the ... |
| 2 | 3eiz | - | http://www.sciencedirect.com/science/article/pii/S0968089614004337 | Influence of azide incorporation on binding affinity by small papain inhibitors | 2014 | AEM Wammes, TG Hendriks - Bioorganic & medicinal , 2014 - Elsevier | ... 20 (b) Docking of leupeptin in the active site of papain (PDB file 1POP). ... 21 Prior to docking we investigated different papain structures of the PDB to explore different ligandpapain complexes, as well as the flexibility of the protein in the area of the binding site. ... |
| 3 | 3pme | - | http://www.sciencedirect.com/science/article/pii/S096808961000876X | The binding of β-d-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: A new class of inhibitors | 2010 | KM Alexacou, AC Tenchiu, ED Chrysina… - Bioorganic & medicinal …, 2010 - Elsevier | ... 11. The structural results show that all inhibitors are bound with essentially no disturbance ofthe overall protein structure. ... However, upon binding to the catalytic site compounds 3pBr, 3pCl,3pCF3, 3oOH, 3pOMe and 3pMe trigger a significant shift of the 280s loop with ... |
| 4 | 4pca | 4oa8, 4oa5 | http://www.sciencedirect.com/science/article/pii/S0968000417301858 | Outer Membrane Protein OmpB Methylation May Mediate Bacterial Virulence | 2017 | DCH Yang, AH Abeykoon, BE Choi, WM Ching- Trends in Biochemical, 2017 - Elsevier | ... on methylation of bacterial OMPs has uncovered novel mechanisms with respect to protein structure and catalytic ... of the 226-residue dimeric O-methyltransferase have been determined in its apo form ( PDB ID:4OA8) and in complex with AdoMet (4OA5) or AdoHcy ( 4PCA ). ... |
| 5 | 3gvc | - | http://www.sciencedirect.com/science/article/pii/S0960852417303887 | Improved xylitol production by expressing a novel D-arabitol dehydrogenase from isolated Gluconobacter sp. JX-05 and co-biotransformation of whole cells | 2017 | X Qi, H Zhang, TA Magocha, Y An, J Yun, M Yang - Bioresource , 2017 - Elsevier | ... Phyre2 (Kelley et al., 2015) was used to predict the 3D structure of ArDH. ..Another two SDR enzymes, short-chain dehydrogenase reductase (PDB ID: 3GVC) of M. tuberculosis and galactitol dehydrogenase (PDB ID: 2WSB) of R. sphaeroides were also used in the superposition of structure modeling. ... |
| 6 | 4h3z | 4odj | http://www.sciencedirect.com/science/article/pii/S0959440X1630166X | How to fold intricately: using theory and experiments to unravel the properties of knotted proteins | 2017 | SE Jackson, A Suma, C Micheletti - Current Opinion in Structural Biology, 2017 - Elsevier | ... Despite the early evidence of a shallowly knotted carbonic anhydrase structure [1 and 2], the ...Homodimeric entries 3BJX and 4H3Z are accordingly represented by chains B instead of thedefault ... The complete list of knotted PDB entries, including a few where knots are likely ... |
| 7 | 4pq9 | - | http://www.sciencedirect.com/science/article/pii/S0959440X14000815 | A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae | 2014 | JH Hehemann, AB Boraston, M Czjzek - Current opinion in structural , 2014 - Elsevier | ... CAZy family, Protein, PDB codes. GH16, -Carrageenase (Pseudoaltermonas carragenovora), 1DYP. -Agarase ... -Porphyranase B (Zobellia galactanivorans), 3JUU. -1,3-Glucanase (Mycobacterium marinum M), 4PQ9. Laminarinase (Thermotoga ... |
| 8 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S0959440X13000407 | The cysteine regulatory complex from plants and microbes: what was old is new again | 2013 | JM Jez, S Dey - Current opinion in structural biology, 2013 - Elsevier | ... To date, both hexameric and trimeric SAT have been described in the literature [ 12?, 13, 14 and 15 ] and as unpublished structures (PDB: 3GVD, 3MC4, 3F1X). The hexameric SAT are a dimer of trimers associated through a head-to-head orientation of the N-terminal domains. ... |
| 9 | 3nfw | - | http://www.sciencedirect.com/science/article/pii/S0944501316301549 | Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans | 2016 | V Sedlek, T Klumpler, J Marek, I Kuera - Microbiological Research, 2016 - Elsevier | ...Sequence and structural comparisons of FerA with a flavin reductase like domain protein family (PF01613). 3NFW E5Q9D7 NmoB Mycobacterium thermoresistibile ... |
| 10 | 3enk | - | http://www.sciencedirect.com/science/article/pii/S0944501313001407 | Functional characterization and transcriptional analysis of galE gene encoding a UDP-galactose 4-epimerase in Xanthomonas campestris pv. campestris | 2014 | CT Li, CT Liao, SC Du, YP Hsiao, HH Lo… - Microbiological …, 2014 - Elsevier | ... based on the detection of hydrogen bonds defined by an electrostatic criterion using the Dictionaryof Protein Secondary Structure database method obtained from PDBsum database. Thethree-dimensional structural model of Xcc GalE was based on E. coli GalE (PDB ID 1XEL ...B. pseudomallei (Bps-GalE, PDB code 3ENK); B. anthracis (Ban-GalE, PDB code 2C20); and T. thermophilus (Tth-GalE, PDB code 2P5U)... |