We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3DAH | 2008 | 13 |
| 3D6B | 2008 | 5 |
| 3D64 | 2008 | 14 |
| 3D63 | 2008 | 2 |
| 3CXK | 2008 | 13 |
| 3CEZ | 2008 | 13 |
| 2N6X | 2016 | 7 |
| 2N6W | 2016 | 6 |
| 2N6S | 2016 | 4 |
| 2N57 | 2015 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |
| 2 | 3k2h | - | http://bioinformatics.oxfordjournals.org/content/early/2015/04/15/bioinformatics... | Global optimization-based inference of chemogenomic features from drug–target interactions | 2015 | S Zu, T Chen, S Li - Bioinformatics, 2015 - Oxford Univ Press | ... In recent years, several non-structure-based methods, which are not limited by the structureinformation have been developed, along the ... Examples of the substructure-domain interactionsvalidated from the PDB database: (A) PDB entry 1u70, (B) PDB entry 3k2h, (C) PDB ... |
| 3 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci5005898 | Large-scale Mining for Similar Protein Binding Pockets: With RAPMAD Retrieval on the Fly Becomes Real | 2014 | T Krotzky, C Grunwald, U Egerland… - Journal of chemical …, 2014 - ACS Publications | ... Again, we searched the PDB for proteins that bind pemetrexed and found six structures: four thymidylate synthases (1JUJ, 1JU6, 3K2H, 4FQS), a folate receptor (4KN2), and a pteridine reductase (2X9G). By culling this set of proteins using PISCES ... |
| 4 | 3k2h | - | http://www.sciencedirect.com/science/article/pii/S1368764615000540 | Inside the biochemical pathways of thymidylate synthase perturbed by anticancer drugs: Novel strategies to overcome cancer chemoresistance | 2015 | L Taddia, D D'Arca, S Ferrari, C Marraccini - Drug Resistance , 2015 - Elsevier | The binding sites of other folate analogs (such as methotrexate) have been studied with TS isolated from other organisms (PDB IDs: 3K2H, 1AXW) and all share the same binding site.. |
| 5 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci300196g | Structural insights into the molecular basis of the ligand promiscuity | 2012 | N Sturm, J D?saphy, RJ Quinn, D Rognan? - Journal of Chemical Information and Modeling, 2012 - ACS Publications | ... To this purpose, we exploited the information in the Protein Data Bank (PDB)19 to identify ligands involved in complexes with different proteins. ... MATERIALS AND METHODS Identification in the sc-PDB of promiscuous ligands and their targets ... |
| 6 | 3k2h | 3nrr, 3kgb | http://informahealthcare.com/doi/abs/10.1517/13543776.2011.587804 | Antifolate agents: a patent review (2006-2010) | 2011 | DL Wright, AC Anderson - Expert opinion on therapeutic patents, 2011 - informahealthcare.com | ... Also reported for the first time in 2010 by the Seattle Structural Genomics Center for Infectious Disease is the structure of DHFR-TS from Babesia bovis bound to NADP, dUMP and pemetrexed (PDB ID: 3K2H) or raltitrexed (PDB ID: 3NRR). ... |
| 7 | 3k2h | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13983 | Targeting plant DIHYDROFOLATE REDUCTASE with antifolates and mechanisms for genetic resistance | 2018 | MG Corral, J Haywood, LH Stehl, KA Stubbs- The Plant, 2018 - Wiley Online Library | The homology models of A. thaliana DHFR‐TS1 and DHFR‐TS2 were created ab initio based on the structure of the bifunctional DHFR‐TS enzyme from B. bovis (PDB 3K2H; Begley et al., 2011), using the I‐TASSER server (Zhang, 2008). |
| 8 | 3k2h | - | http://www.theses.fr/2015STRAF059 | Characterization of natural product biological imprints for computer-aided drug design applications | 2015 | N Sturm - 2015 - theses.fr | ... Changes in sequence and structure also explain the poor similarity between SB4 inhibitor-binding sites in Mitogen-activated protein (MAP) kinase 14 and MAP kinase 1 (PDB codes: 1bl7, 3erk), and between the antifolate LYA-binding site in human and protozoan thymidylate synthases (PDB codes: 1juj, 3k2h). ... |
| 9 | 3k2c | - | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/758029/DC1/embed/media-... | Supplementary material to GISA: Using Gauss Integrals to identify rare conformations in protein structures | 2019 | C Grnbk, T Hamelryck, P Rgen - 2019 - biorxiv.org | The rar2 scoring method scans for structures having a distribution of words significantly different from that found in the old, here set to 7 ngstrm; the E chain of the 2er7 structure is disqualified for this reason, but 7> means that in the PDB -file the chain id was left blank 14 |
| 10 | 3k2c | - | https://www.sciencedirect.com/science/article/pii/S016158901930197X | The Schistosoma mansoni cyclophilin A epitope 107-121 induces a protective immune response against schistosomiasis | 2019 | TT de Melo, MM Mendes, CC Alves, GB Carvalho- Molecular, 2019 - Elsevier | The resulting structure was predicted using six templates (4I9Y: e3 sumo-protein ligase Cyclophilin from Homo sapiens, variant A; 1IHG: bovine cyclophilin 40, 3K2C : peptidyl-prolyl cuniculi; 1XO7: Cyclophilin from Trypanosoma cruzithe bovine Cyclophilin 40 ( PDB code: c1ihgA |