We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2LWK | 2012 | 24 |
| 2LPD | 2012 | 1 |
| 2LOL | 2012 | 5 |
| 2LKY | 2011 | 5 |
| 2LHJ | 2011 | 0 |
| 2LBB | 2011 | 4 |
| 2L4B | 2010 | 5 |
| 2KZ0 | 2010 | 5 |
| 2KWL | 2010 | 9 |
| 2KOK | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ixc | - | http://www.sciencedirect.com/science/article/pii/S002228361300003X | PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in a Crystalline Environment | 2013 | M Lu, J Ma - Journal of molecular biology, 2013 - Elsevier | ... There are totally 29 out of the 65 space groups in this case, shown in the leftmost column of Table 1. In the Protein Data Bank (PDB), 73.3% of the structures belong to this case. ... In the PDB, 24.0% of the structures belong to the case. ... |
| 2 | 3ixc | - | http://www.earticle.net/Article.aspx?sn=291808 | Molecular Docking Studies of Wolbachia Endosymbiont of Brugia Malayi's Carbonic Anhydrase Using Coumarin-chromene Derivatives Towards Designing Anti-filarial | 2016 | P Malathy, G Jagadeesan, K Gunasekaran - , 2016 - earticle.net | ... The BLAST results shows a hexapeptide transferase family protein from Anaplasmaphagocytophilum (PDB ID: 3IXC) having 77% similarity and 54% identity with wBm carbonicanhydrase. Hence the above enzyme is chosen as the template and the 3D structure of carbonic ... |
| 3 | 3ixc | 3oi9, 3mxu, 3laa, 3mdx, 3m1x, 3lqw | http://www.google.com/patents/US20130274441 | General Method for Designing Self-Assembling Protein Nanomaterials | 2013 | D Baker, N King, W Sheffler, T Yeates - US Patent App. 13/802,464, 2013 - Google Patents | ... subunits. The wild-type protein from which O3-33 was derived (PDB ID 3N79) did not assemble to a higher order structure; it eluted from the column mostly as trimers, with a small peak corresponding to a dimer of trimers. Analytical ... |
| 4 | 3ixc | - | https://link.springer.com/article/10.1007/s10534-019-00190-8 | Molecular structure of thermostable and zinc-ion-binding -class carbonic anhydrases | 2019 | W Wang, Y Zhang, L Wang, Q Jing, X Wang, X Xi- BioMetals, 2019 - Springer | are displayed as cartoon diagrams with different colors and are labelled with their respective PDB codes using -TtCA 169 , the 1011 loop is almost the same as 1V67, 1XHD, 2FKO, 3IXC , 4MFG, and However, in the structure of -TtCA 169 , half of the C-terminal -helix is |
| 5 | 3ixc | - | https://repository.kaust.edu.sa/handle/10754/652899 | Activity Assessment of a Halophilic -carbonic Anhydrase from the Red Sea Brine Pool Discovery Deep | 2019 | A Vancea - 2019 - repository.kaust.edu.sa | 25 CA_D 3R1W 3TIO 2FKO 3R3R 3IXC 3VNP 1XHD 4N27 1QRG 3KWC Figure 7: Structural homology study - structural overlay of CA_D monomer with reported PDB structures Table 2: List of the PDB structure used in the structure homology study together with the organism |
| 6 | 3ix6 | 4whx, 3qat | https://journals.asm.org/doi/abs/10.1128/MMBR.00029-16 | The blueprint of a minimal cell: MiniBacillus | 2016 | DR Reu, FM Commichau, J Gundlach- Microbiology and, 2016 - Am Soc Microbiol | SUMMARY Bacillus subtilis is one of the best-studied organisms. Due to the broad knowledge and annotation and the well-developed genetic system, this bacterium is an excellent for ... TABLE 2 The complete gene set of MiniBacillus thyB BSU21820 No 2.1.1.45 3IX6 Brucella melitensis |
| 7 | 3ix6 | - | https://www.nature.com/articles/s41598-019-48940-5 | Analysis of mutations leading to para-aminosalicylic acid resistance in Mycobacterium tuberculosis | 2019 | B Pandey, S Grover, J Kaur, A Grover- Scientific reports, 2019 - nature.com | crystal structures of the ThyA enzyme in Brucella melitensis (PDBID: 3IX6 ), M. tuberculosis 3QJ7) 20 , Enterococcus faecalis ( PDB IF: 6QYA), and Escherichia coli ( PDB ID: 1AXW Comparative analysis of the binding free energy, secondary structure elements, and free energy |
| 8 | 3inn | - | http://pubs.acs.org/doi/abs/10.1021/bi1004206 | Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus | 2010 | A Satoh, S Konishi, H Tamura, HG Stickland? - Biochemistry, 2010 - ACS Publications | ... entry 2EJC) and the ATP complex structure of a protein annotated as PS of Brucella melitensis (PDB entries 3INN). In general, the PS protomer can be divided into two domains (N- and C-terminal domains), with the active site located at the interface of these domains. ... |
| 9 | 3inn | 4ed4 | http://pubs.acs.org/doi/abs/10.1021/ci500553a | Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity | 2014 | T Krotzky, T Rickmeyer, T Fober… - Journal of chemical …, 2014 - ACS Publications | ... To set up a more challenging task with respect to conformational and structural diversity, we ... serverPISCES of the Dunbrack lab(35) was employed, which kept only PDB structures that agreed ... thesequence identity does not exceed 25%, the method of structure determination is ... |
| 10 | 3iml | - | http://pubs.rsc.org/doi/c5ra27938k | Structure of a thermostable methionine adenosyltransferase from Thermus thermophilus HB27 reveals a novel fold of the flexible loop | 2016 | Y Liu, W Wang, W Zhang, Y Dong, F Han, M Raza - RSC Advances, 2016 - pubs.rsc.org | ... sapiens (HsMAT, PDB code: 2P02), Burkholderia pseudomallei (BpMAT, PDB code: 3IML),Thermococcus kodakarensis ... 20 The structure of EcMAT (PDB code: 1RG9, chain A) was selectedas the ... the underlying reason for its thermostability, we solved the crystal structure of apo ... |