We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2KHR | 2009 | 5 |
| 2KHP | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ecd | 3h7f | http://www.biomedcentral.com/1472-6750/14/93 | A novel serine hydroxymethyltransferase from Arthrobacter nicotianae: characterization and improving catalytic efficiency by rational design | 2014 | W Jiang, L Chen, S Yuan, B Li, Z Liu - BMC biotechnology, 2014 - biomedcentral.com | ... directed mutagenesis was indicated on the three-dimensional structure of AnSHMT, which wasconstructed from the known x-ray structure of Burkholderia Pseudomallei MycobacteriumTuberculosis T.Th.Hb8 (PDB entry 3H7F, 2DKJ and 3ECD) using Swiss ... |
| 2 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 3 | 3ecd | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13211/abstract | How pyridoxal 5'‐phosphate differentially regulates human cytosolic and mitochondrial serine hydroxymethyltransferase oligomeric state | 2015 | G Giardina, P Brunotti, A Fiascarelli, A Cicalini… - FEBS …, 2015 - Wiley Online Library | ... shows a completely open conformation of the dimer (PDB id: 3ecd), as in the case of apo-SHMT2 ...method using the apo-enzyme (PDB: 3ou5) as search model in MOLREP [54 ... F, Morea V,Angelaccio S, Saccoccia F, Contestabile R & Ilari A (2014) The crystal structure of archaeal ... |
| 4 | 3e7d | - | http://www.freepatentsonline.com/y2016/0122392.html | POLYPEPTIDES FOR USE IN SELF-ASSEMBLING PROTEIN NANOSTRUCTURES | 2016 | D Baker, JB Bale, NP King - US Patent , 2016 - freepatentsonline.com | ... panel B) comprise 12 pentamers (dark grey) and 30 dimers (light grey), and the I32-28 designmodel and crystal structure (panel C ... Starting proteins were those derived from pentameric, trimeric,and dimeric crystal structures from the Protein Data Bank (PDB), along with a ... |
| 5 | 3e7d | 3uk1 | http://link.springer.com/article/10.1007/s00894-014-2136-5 | CH pi interactions in proteins: prevalence, pattern of occurrence, residue propensities, location, and contribution to protein stability | 2014 | M Kumar, PV Balaji - Journal of molecular modeling, 2014 - Springer | ... The coordinates of proteins included in the dataset were downloaded from the protein databank [33]. ... discoideum non-muscle type myosin-2 heavy chain (PDB id 3BZ9). ... Brucella abortus CobH, precorrin-8X methylmutase 3E7D D Phe16:CE1 Tyr12 2.83 1.84 172 66 ... |
| 6 | 3e5y | - | http://link.springer.com/article/10.1007/s12038-015-9554-0 | Analysis of coreperiphery organization in protein contact networks reveals groups of structurally and functionally critical residues | 2015 | AE Isaac, S Sinha - Journal of biosciences, 2015 - Springer | ... residues are in the innermost cores, suggesting that the network core is critically important in maintaining the structural stability of ... 2.1 Protein structure analysis. ... set of 66 non-redundant protein structures obtained from the Protein Data Bank ( http://www.rcsb.org/pdb ) that include ... For the exceptions, viz., proteins with PDB ids 1a30, 1aac, 1auw, 1cbr, 1vl4, 3e5y and 3js3, we verified that those proteins among this group ( |
| 7 | 3dpi | - | http://www.sciencedirect.com/science/article/pii/S1476927116301128 | Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4 | 2016 | M Gupta, R Chauhan, Y Prasad, G Wadhwa - Biology and Chemistry, 2016 - Elsevier | ... Homology based protein structure prediction employs submission of query protein sequenceto BLASTp against PDB database for identifying ... 3DPI, 2PZ8 and 1NSY. ... The dimensions of bindingspace on three dimensional structure of protein were identified in DockBlaster itself. ... |
| 8 | 3dms | - | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S2 | Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases | 2012 | R Vinekar, C Verma, I Ghosh - BMC , 2012 - bmcbioinformatics.biomedcentral. | ... The current study therefore concentrates mainly on dimeric NADP-dependent IDHs from subfamilies I and II and additionally subfamily IV (Table 1), with an emphasis on regulation in dimeric M.tb IDH. Burcholderi apseudomallei BpIDH Q63WJ4_BURPS 3DMS. ... |
| 9 | 3dms | - | http://pubs.acs.org/doi/abs/10.1021/bi300483w | Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase | 2012 | S Gon?alves, SP Miller, MA Carrondo, AM Dean? - Biochemistry, 2012 - ACS Publications | ... To date, there are 27 crystal structures of E. coli isocitrate dehydrogenase in the Protein Data Bank (Table 3). Burkholderia pseudomallei Strain 1710b (UNIPROT Q3JV82), 74.2% identity 3dms 71 1.65 2011 0.92 0.62 ... |
| 10 | 3dmp | - | http://www.sciencedirect.com/science/article/pii/S0141813016304482 | Unravelling the Potential of a New Uracil Phosphoribosyltransferase (UPRT) from Arabidopsis thaliana in Sensitizing HeLa Cells towards 5-Fluorouracil | 2016 | S Narayanan, P Sanpui, L Sahoo, SS Ghosh - International journal of , 2016 - Elsevier | ... UPRT templates from Protein Data Bank (PDB) PDB: 2EHJ (E. coli UPRT), PDB: 3DMP(Burkholderia pseudomallei UPRT) and PDB: 1BD4 (Toxoplasma gondii UPRT) were chosenfor generating the three ... 1). The three-dimensional structure of AtUPRT ( Fig. ... |