We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SKF | 2023 | 0 |
| 8SF3 | 2023 | 2 |
| 8SC0 | 2023 | 1 |
| 8SBZ | 2023 | 0 |
| 8SBY | 2023 | 0 |
| 8SBX | 2023 | 0 |
| 8SBW | 2023 | 1 |
| 8SBV | 2023 | 0 |
| 8SBO | 2023 | 1 |
| 8SBN | 2023 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7lxy | - | https://www.nature.com/articles/s41467-022-32262-8 | SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization | 2022 | D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com | structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43 |
| 2 | 7lxy | 7ly2, 7lxz, 7ly3 | https://www.nature.com/articles/s41423-021-00752-2 | Neutralizing antibodies for the prevention and treatment of COVID-19 | 2021 | L Du, Y Yang, X Zhang- Cellular & Molecular Immunology, 2021 - nature.com | Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) initiates the infection process by binding to the viral cellular receptor angiotensin-converting enzyme 2 through the receptor-binding domain (RBD) in the S1 subunit of the viral spike (S) protein. ... a–e Cryo-EM structures of the SARS-CoV-2 S trimer bound to NTD-targeting nAbs a S2L28 (PDB 7LXZ), b S2M28 (PDB 7LY2), c S2X333 (PDB 7LXY), d 4-8 (PDB 7LQV), and e 4A8 (PDB 7C2L). |
| 3 | 7lxx | 7ly3, 7ly2, 7lxy, 7ly0 | https://link.springer.com/article/10.1007/s00018-021-04008-0 | Structural and functional insights into the spike protein mutations of emerging SARS-CoV-2 variants | 2021 | D Gupta, P Sharma, M Singh, M Kumar- Cellular and Molecular, 2021 - Springer | The postfusion state is characterized by the formation of a needle-like structure in which both FP and TM associate together ( PDB id: 6M3W) (Fig. 2E). The postfusion trimer state is |
| 4 | 7lxw | 7lxx, 7ly0, 7soa, 7sof, 7ly3 | https://www.cell.com/cell-reports/pdf/S2211-1247(22)01868-X.pdf | Structural analysis of receptor engagement and antigenic drift within the BA. 2 spike protein | 2023 | JW Saville, D Mannar, X Zhu, AM Berezuk, S Cholak- Cell Reports, 2023 - cell.com | Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly |
| 5 | 7luy | 6wct | https://www.nature.com/articles/s41467-025-61732-y | Comprehensive profiling of the catalytic conformations of human Guanylate kinase | 2025 | L Wang, Z Li, Y Xuan, J Qin, S Li, F Zhong- Nature, 2025 - nature.com | The atomic coordinates and structure factors for GMPK in its free form and substrate-bound forms generated in this study were deposited to the Protein Data Bank ( PDB ) ... The source data underlying Figs. 1i, 2c, 3i and Supplementary Fig. 6c–i, 9a–d, 11e are provided as a Source Data file. Previously published data for crystal structures of GMPK are available with PDB accession codes: 1EX6, 1EX7, 1LVG, 1S4Q, 1S96, 1ZNX, 1ZNW, 1GKY, 2ANB, 2ANC, 2QOR, 3TR0, 6WCT, 7LUY, 8PTS. |
| 6 | 7l6s | - | https://www.nature.com/articles/s41598-025-93122-1 | Structural insights into fungal and human topoisomerase II with implications for in silico antifungal drug design | 2025 | S Sappati, K Kondaka, I Gabriel, M Baginski- Scientific Reports, 2025 - nature.com | Our analysis extended to include representative from Amoebozoa (Balamuthia mandrillaris), utilizing PDB ID 7L6S for a comprehensive comparative study. |
| 7 | 7l6c | - | https://www.nature.com/articles/s41598-025-97513-2 | Identification of novel inhibitors targeting Mycobacterium abscessus InhA through virtual screening, docking, and molecular dynamic simulations | 2025 | M Abbas, AR Alanzi, KI Sahibzada, M Nawaz- Scientific Reports, 2025 - nature.com | Enoyl-ACP reductase InhA ( PDB : 7L6 C) crystal structures were carefully chosen after an The possible binding modes of the top six hit compounds in the 7L6c binding pocket. Hit |
| 8 | 7kna | - | https://www.nature.com/articles/s41551-025-01411-x | Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibodyviral glycoprotein complexes | 2025 | LM Sewall, R de Paiva Froes Rocha- Nature Biomedical, 2025 - nature.com | well as structural insight into sites of vulnerability 4 ; however, solving structures of individual Models of HA H1 ( PDB 7KNA ) and a human polyclonal Fab with a polyalanine backbone |
| 9 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 10 | 7k4n | - | https://www.nature.com/articles/s41564-021-00972-2 | Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail | 2021 | J Dong, SJ Zost, AJ Greaney, TN Starr- Nature, 2021 - nature.com | Understanding the molecular basis for immune recognition of SARS-CoV-2 spike glycoprotein antigenic sites will inform the development of improved therapeutics. We determined the structures of two human monoclonal antibodiesAZD8895 and AZD1061which form the basis ... A comparison of the cryo-EM structure of S2E12 in complex with the S glycoprotein (PDB ID: 7K4N) suggests that the mAb S2E12 likely uses nearly identical antibody–RBD interactions as those of AZD8895 |