We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SAE | 2023 | 0 |
| 8SAD | 2023 | 0 |
| 8SAC | 2023 | 0 |
| 8SAB | 2023 | 0 |
| 8SAA | 2023 | 0 |
| 8SA9 | 2023 | 0 |
| 8SA8 | 2023 | 0 |
| 8SA7 | 2023 | 0 |
| 8G0V | 2023 | 0 |
| 8G0U | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7ki4 | 7ki6 | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/advs.202501996 | Potent Crossneutralizing Antibodies Reveal Vulnerabilities of Henipavirus Fusion Glycoprotein | 2025 | Y Ren, P Fan, X Zhang, T Fang, Z Chen- Advanced, 2025 - Wiley Online Library | structure of LayV F ( PDB ID: 8FEL). The root mean square deviation between the model and the reference LayV F or an incomplete postfusion NiV F ( PDB from the PDB database onto This study also used 6TYS, 7KI4, 7KI6, 7UOP, 7UP9, 7UPA, 7UPK, 7UPB, 7UPD, 6T3F, 8FEL, 8DMJ, and 7FAB from the Protein Data Bank. The data that support the findings of this study are available from the corresponding author upon reasonable request. |
| 2 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 3 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 4 | 7k4n | - | https://www.nature.com/articles/s41564-021-00972-2 | Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail | 2021 | J Dong, SJ Zost, AJ Greaney, TN Starr- Nature, 2021 - nature.com | Understanding the molecular basis for immune recognition of SARS-CoV-2 spike glycoprotein antigenic sites will inform the development of improved therapeutics. We determined the structures of two human monoclonal antibodiesAZD8895 and AZD1061which form the basis ... A comparison of the cryo-EM structure of S2E12 in complex with the S glycoprotein (PDB ID: 7K4N) suggests that the mAb S2E12 likely uses nearly identical antibody–RBD interactions as those of AZD8895 |
| 5 | 7k45 | - | https://www.nature.com/articles/S41591-021-01294-w | Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies | 2021 | RE Chen, X Zhang, JB Case, ES Winkler, Y Liu- Nature medicine, 2021 - nature.com | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused the global COVID-19 pandemic. Rapidly spreading SARS-CoV-2 variants may jeopardize newly introduced antibody and vaccine countermeasures. Here, using monoclonal antibodies (mAbs), animal ... Structures of the SARS-CoV-2 RBD in complex with a representative neutralizing antibody from (a) class 1 (S2E12, PDB: 7K45), or (b) class 2 (S309, PDB: 6WPS). |
| 6 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 7 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |
| 8 | 7k43 | 7k4n | https://www.nature.com/articles/s41401-021-00851-w | Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19 | 2022 | C Wu, W Yin, Y Jiang, HE Xu- Acta Pharmacologica Sinica, 2022 - nature.com | on uncovering structures and functions for structural biology of SARS-CoV-2 and discuss important biological issues that remain to be addressed. We present the examples of structure - ... S2E12 (represented as a cyan surface) binds to the “up” conformation of SARS-CoV-2 S RBD (PDB: 7K4N); S2M11 (represented as a brown surface) binds to the “down” conformation of SARS-CoV-2 S RBD (PDB: 7K43); |
| 9 | 7k43 | 7k4n | https://pubs.acs.org/doi/abs/10.1021/acs.jpcb.1c00395 | Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies | 2021 | GM Verkhivker, L Di Paola- The Journal of Physical Chemistry B, 2021 - ACS Publications | Structural and biochemical studies of the severe acute respiratory syndrome (SARS)-CoV-2 spike glycoproteins and complexes with highly potent antibodies have revealed multiple conformation-dependen... |
| 10 | 7jzl | - | https://www.sciencedirect.com/science/article/pii/S0022283621003892 | A brief history of de novo protein design: minimal, rational, and computational | 2021 | DN Woolfson- Journal of Molecular Biology, 2021 - Elsevier | For comparison, the whole PDB is doubling in size approximately every 67 years. There are now over 100 structures of de novo peptides and proteins, which is a good resource ... Figure 2. A gallery of high-resolution de novo designed peptide and protein structures .. additional protein chains are shown in grey these are for protein fusions to the designs (6FES99) or with targeted protein-protein interactions (4OYD,5VID,6IWB,6XXV,7JZL,6YWC) |