We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7MCM | 2021 | 0 |
| 7M5E | 2021 | 2 |
| 7M55 | 2021 | 4 |
| 7M53 | 2021 | 12 |
| 7M52 | 2021 | 2 |
| 7M51 | 2021 | 3 |
| 7M3W | 2021 | 0 |
| 7M3K | 2021 | 0 |
| 7M2D | 2021 | 0 |
| 7LYY | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6wps | 7jw0, 7k45, 7jx3, 7jv6, 7jva, 7jvc | https://pubs.rsc.org/en/content/articlehtml/2021/sc/d1sc01203g | Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies | 2021 | J Chen, K Gao, R Wang, GW Wei- Chemical science, 2021 - pubs.rsc.org | Our predictions are built from the X-ray crystal structure of SARS-CoV-2 S protein and ACE2 ( PDB 6M0J), 57 and various antibodies (PDBs 6WPS , 66 6XC2, 58 6XC3, 58 6XC4, 58 6XC7, 58 6XE1, 64 6XEY, 83 6XKP, 72 6XKQ, 72. |
| 2 | 6wps | 7jw0, 7jxe, 7jv2, 7k43, 7jvc | https://www.mdpi.com/965720 | Structural analysis of neutralizing epitopes of the SARS-CoV-2 spike to guide therapy and vaccine design strategies | 2021 | MT Finkelstein, AG Mermelstein, E Parker Miller- Viruses, 2021 - mdpi.com | Multiple structures of S in complex with ACE2 have been determined [9,17,21,22,26 S proteins from SARS-CoV, SARS-CoV-2, and MERS-CoV undergo dramatic structural changes to S2 forms an elongated structure , and the two heptad repeats, HR1 and HR2, eventually form a ... S2M11 from RBM Class III (PDB ID 7K43 [71]), and CR3022 (left) and S309 (right) from RBD Core (PDB IDs 6W41 [86] and PDB ID 6WPS [ |
| 3 | 6wgy | 3hwk | https://www.sciencedirect.com/science/article/pii/S0141813021009077 | Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554 | 2021 | SH Park, CW Lee, DW Bae, H Do, CS Jeong- International Journal of, 2021 - Elsevier | of citrate-bound HyCS (closed conformation) and apo-EcCS (open conformation, PDB code: 4G6B residues showed a face-to-edge interaction in the open state structure of EcCS citrate binding-induced conformational changes result in the transfer of further structural changes to ... Mycobacterium tuberculosis (PDB code 3HWK), has a Lys residue at the position corresponding to Trp262 of HyCS but that from the Mycobacterium tuberculosis variant bovis AF2122/97 (PDB code 6WGY) contains a Ser residue instead |
| 4 | 6w7x | - | http://biotech.aiijournal.com/EN/abstract/abstract13063.shtml | Biochemical Characterization and Structural Analysis of N-acetylornithine Transaminase from Synechocystis sp. PCC6803 | 2021 | F BAI, Z LI, X WANG, Z HU, L BAO- Biotechnology, 2021 - biotech.aiijournal.com | PLP PLP slr1022, 2E54, 6W7X , 2EH6 and SWISS- MODEL N- PDB ID 2E54 A: Cartoon structure of Slr1022 |
| 5 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01723-5 | Combination and tricombination therapy to destabilize the structural integrity of COVID-19 by some bioactive compounds with antiviral drugs: insights from | 2021 | HR Abd El-Mageed, DA Abdelrheem, SA Ahmed- Structural Chemistry, 2021 - Springer | SARS-CoV-2 main protease ( PDB ID: 6LU7), (5b) SARS-CoV-2 spike protein domain ( PDB ID: 6VYB ), and (5c) human entry receptor ACE2 ( PDB ID: 1R42 validation was carried out using our previously published work [36] with re-docking of the co-crystal structure (N3) as an |
| 6 | 6vyb | - | https://pdfs.semanticscholar.org/7a8c/b4cb523ba6ce60d7e87c02e8558c13363b41.pdf | Comparative docking studies on curcumin with COVID-19 proteins | 2020 | R Suravajhala, A Parashar, B Malik, VA Nagaraj - 2020 - pdfs.semanticscholar.org | were subjected to a 3D structure generation on CORINA [12] using their SMILE Preparation of proteins and grid parameters: The protein data bank ( PDB ) structures of different proteins were retrieved from RCSB membrane protein (6M17), polymerase (6M71), spike ( 6VYB ) |
| 7 | 6vyb | - | https://link.springer.com/article/10.1007/s40495-021-00259-4 | Phytocompounds of Rheum emodi, Thymus serpyllum, and Artemisia annua Inhibit Spike Protein of SARS-CoV-2 Binding to ACE2 Receptor: In Silico | 2021 | R Rolta, D Salaria, PP Sharma, B Sharma- Current pharmacology, 2021 - Springer | -CoV-2 spike ectodomain structure ( 6VYB , open state) with a ( PDB ID: 6VXX, and 6VYB ) have 6Na + ions to neutralize complexes. The artemisinin complexes with 6VXX and 6VYB |
| 8 | 6vyb | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1778537 | Ethnomedicines of Indian origin for combating COVID-19 infection by hampering the viral replication: using structure-based drug discovery approach | 2021 | S Alagu Lakshmi, RMB Shafreen, A Priya- Structure and, 2021 - Taylor & Francis | CoV-2 main protease ( PDB ID: 5R82. pdb ), spike protein ( PDB ID: 6VYB . pdb ) and human In order to minimize the energy, PDB structures of the target proteins were refined through for combating COVID-19 infection by hampering the viral replication: using structure -based drug |
| 9 | 6vyb | - | https://www.mdpi.com/1034566 | Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study | 2021 | A Abdelaal Ahmed Mahmoud M Alkhatip- International Journal of, 2021 - mdpi.com | SARS-CoV-2 currently lacks effective first-line drug treatment. We present promising data from in silico docking studies of new Methisazone compounds (modified with calcium, Ca; iron, Fe; magnesium, Mg; manganese, Mn; or zinc, Zn) designed to bind more strongly to key proteins ... We found that the highest binding interactions were found with the spike protein (6VYB), with the highest overall binding being observed with Mn-bound Methisazone at −8.3 kcal/mol, |
| 10 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01586-w | Destabilizing the structural integrity of COVID-19 by caulerpin and its derivatives along with some antiviral drugs: An in silico approaches for a combination | 2020 | SA Ahmed, DA Abdelrheem, HR Abd El-Mageed- Structural Chemistry, 2020 - Springer | Protein preparation. The 3D crystal structure of the SARS-CoV-2 main protease Mpro ( PDB ID: 6LU7) and the cryo-electron microscopic structure of the SARS-CoV-2 spike protein Sp ( PDB ID: 6VYB ) were taken from the PDB (Protein Data Bank) site |