We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6Q1Y | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 6UCZ | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UJD | 2019 | 0 |
| 6ULO | 2019 | 0 |
| 2LHJ | 2011 | 0 |
| 6UWQ | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6vxx | - | https://pubs.acs.org/doi/abs/10.1021/acs.jpcb.0c04553 | Developing a fully glycosylated full-length SARS-CoV-2 spike protein model in a viral membrane | 2020 | H Woo, SJ Park, YK Choi, T Park- The Journal of, 2020 - ACS Publications | This technical study describes all-atom modeling and simulation of a fully glycosylated full-length SARS-CoV-2 spike (S) protein in a viral membrane. First, starting from PDB: 6VSB and 6VXX, full-l... |
| 2 | 4lgv | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152403 | Determinants of Cofactor Specificity for the Glucose-6-Phosphate Dehydrogenase from Escherichia coli: Simulation, Kinetics and Evolutionary Studies | 2016 | M Fuentealba, R Muoz, P Maturana, A Krapp - PloS one, 2016 - journals.plos.org | ... Four additional G6PDH sequences were included: those from Mycobacterium avium(Actinobacteria), whose structure is known (PDB ID 4LGV), from Borreliaburgdorferi (Spirochaetes),Synechocisits (Cyanobacteria) and Chlamydophila pneumoniae (Chlamydiae). ... |
| 3 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01586-w | Destabilizing the structural integrity of COVID-19 by caulerpin and its derivatives along with some antiviral drugs: An in silico approaches for a combination | 2020 | SA Ahmed, DA Abdelrheem, HR Abd El-Mageed- Structural Chemistry, 2020 - Springer | Protein preparation. The 3D crystal structure of the SARS-CoV-2 main protease Mpro ( PDB ID: 6LU7) and the cryo-electron microscopic structure of the SARS-CoV-2 spike protein Sp ( PDB ID: 6VYB ) were taken from the PDB (Protein Data Bank) site |
| 4 | 4ixo | - | https://pubs.acs.org/doi/abs/10.1021/acs.chemrev.2c00106 | Designing Artificial Metalloenzymes by Tuning of the Environment beyond the Primary Coordination Sphere | 2022 | C Van Stappen, Y Deng, Y Liu, H Heidari- Chemical, 2022 - ACS Publications | structure of the active site of cytochrome c peroxidase ( PDB structure of the active site of the F43H/H64L Mb mutant ( PDB bound Ni 2+ ( PDB ID: 4IXO ) and (f) Co 2+ ( PDB ID: 4IWW). |
| 5 | 3qhd | 3P0Z, 3p0z | http://commons.lib.niu.edu/handle/10843/21551 | Design, synthesis, and evaluation of potential Burkholderia pseudomallei IspF inhibitors | 2019 | S Watkins - 2019 - commons.lib.niu.edu | xvi nOe Nuclear Overhauser enhancement/nuclear Overhauser effect PDB Protein Data Bank Pf Plasmodium falciparum ppm Parts per million RST Relative saturation transfer SAR Structure activity relationship SSGCID Seattle Structural Genomics Center for Infectious Disease ... It is possible the sp2 N of the imidazole is binding to the Zn2+, as seen in the crystal structures of 88 in BpIspF (3P0Z, 3QHD). |
| 6 | 3gqt | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jhet.3617 | Design, Synthesis, and Biological and In Silico Study of FluorineContaining Quinoline Hybrid Thiosemicarbazide Analogues | 2019 | DB Patel, KD Patel, NP Prajapati- Journal of, 2019 - Wiley Online Library | Thus, design, development, and structure modification existing drugs are necessary with highly selective potency on specific strains Entry, Code no. R 1, R 2, R 3, Product, Yield (%)a a Purified yield. 1, 8a, 4CF 3, 6CF 3, ... Figure 4c describes the interaction details of compounds 8d and 8k with PDB: 3GQT; compound 8d showed four H‐bond interactions |
| 7 | 3eoo | - | http://www.tandfonline.com/doi/abs/10.1080/07391102.2016.1223754 | Design, Synthesis and Evaluation of Pyrazolo-Pyrazole Derivatives onMethylisocitratelyase Of Pseudomonas aeruginosa: Insilico and invitro study | 2016 | M Pulaganti, C Suresh Kumar - Journal of Biomolecular Structure , 2016 - Taylor & Francis | ... possessing the highest sequence identity. We finally picked the A-chain of 1MUM and 3EOOas ... carefully editing PIR file and PDB file template.The developed .ali, .py, pdb template files ...structure of MICL with build command of modeller, using default parameters. ... |
| 8 | 5umf | - | https://books.google.com/books?hl=en&lr=&id=XARADwAAQBAJ&oi=fnd&pg=PA97&dq=%225U... | Design of synthetic symmetrical proteins | 2017 | JRH Tameb, ARD Voet- Synthetic Biology: Volume 2, 2017 - books.google.com | assembly, Ribulose-phosphate structure but since exhibits alpha 3-epimerase, C and 2 PDB : 5UMF ) and 12-fold rotational symmetry (cartoon depiction; from left to right, PDB : 4YY2, 4YXX designs will without any doubt improve our understanding of protein structure and stability |
| 9 | 3v7o | 4g50 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256280/ | Design of an expression system to enhance MBP-mediated crystallization | 2017 | T Jin, W Chuenchor, J Jiang, J Cheng, Y Li - Scientific , 2017 - ncbi.nlm.nih.gov | ... 25 , GST 26 , TRX 27 , green fluorescent protein (GFP) 28 ,29 , SUMO (pdb: 3V7O and 4G50 ...platform is increasingly appreciated 38 ,39 , the optimal sequence, length, and structure of the ...The death domain superfamily is a structural motif found in many proteins that are involved ... |
| 10 | 3gaf | - | https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 | Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability | 2023 | Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com | -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42], |