We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9D32 | 2025 | 0 |
| 9D6W | 2025 | 0 |
| 9D6X | 2025 | 0 |
| 9D6Y | 2025 | 0 |
| 9D6Z | 2025 | 0 |
| 9D71 | 2025 | 0 |
| 9D8S | 2024 | 0 |
| 9D9M | 2024 | 0 |
| 9DAK | 2025 | 0 |
| 9DAZ | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6bfu | 6nb6, 6nb7, 6nb3, 6tys, 6q04 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3541361 | Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology-and bioinformatic-based predictions | 2020 | A Grifoni, J Sidney, Y Zhang- -HOST-MICROBE-D, 2020 - papers.ssrn.com | with data about immune epitopes, protein structures , and host responses to virus infections (Pickett et al., 2012) glycoprotein structure ( PDB : 6ACD). The calculated surface of the top 10 amino acid residues Non- structural protein 3b 2 0 Protein 7a 2 0 Protein 9b 2 0 |
| 2 | 3p96 | 3km3, 3k9g | http://scripts.iucr.org/cgi-bin/paper?ba5235 | Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal | 2016 | TC Terwilliger, G Bunkczi, LW Hung - Section D: Structural , 2016 - scripts.iucr.org | ... Journal logo, STRUCTURAL BIOLOGY. ... 49-93.] ) that accounts for over 70% of depositions of experimentally phased structures in the Protein Data Bank (PDB; Berman et ... requires a specific element to be present at a limited number of sites in the macromolecular structure and the ... |
| 3 | 2lwk | - | http://pubs.acs.org/doi/abs/10.1021/acs.jcim.5b00593 | Can Holo NMR Chemical Shifts be Directly Used to Resolve RNA-Ligand Poses? | 2016 | AT Frank - Journal of Chemical Information and Modeling, 2016 - ACS Publications | ... shift data within standard procedures to aid in efficiently determining the 3D structure ofRNA-ligand complexes by acting as an additional source of structural information that is 4 Page4 of 30 ... promoter-DPQ complex (PDBID: 2LWK, BMRBID: 18633)37 (see Fig. 1). ... |
| 4 | 3nfw | - | http://aem.asm.org/content/79/10/3282.short | Camphor Pathway Redux: Functional Recombinant Expression of 2, 5-and 3, 6-Diketocamphane Monooxygenases of Pseudomonas putida ATCC 17453 with Their Cognate Flavin Reductase Catalyzing Baeyer-Villiger Reactions | 2013 | H Iwaki, S Grosse, H Bergeron, H Leisch? - Applied and Environmental Microbiology, 2013 - Am Soc Microbiol | ... The closest homolog whose structure has been determined is nitrilotriacetate monooxygenase component B (NTA-MoB) (189 amino acids) derived from Mycobacterium thermoresistibile that was characterized as a homodimer with a split-barrel motif typical of short-chain flavin reductases (PDB ID 3NFW) ... |
| 5 | 5umf | 3fdz | https://www.frontiersin.org/articles/10.3389/fcimb.2018.00352/full | CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii | 2018 | E Filippova, AS Halavaty, G Minasov- Frontiers in cellular, 2018 - eprints.whiterose.ac.uk | Crystallography revealed insights into the overall structure , protein oligomeric states and molecular details of active sites important for ligand recognition The targets studied herein were crystallized and their structures characterized, as structural studies have |
| 6 | 4q1t | - | https://www.nature.com/articles/ncomms15179 | CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum | 2017 | Y Jiang, F Qian, J Yang, Y Liu, F Dong, C Xu- Nature, 2017 - nature.com | ... 5b). Assuming that D154 and N155 of cgProB are part of the active site, 3D protein structure modelling indicated that five amino-acid residues (G149, G153, D154, N155, and D156) participate in a complex hydrogen-bonding network with L-proline (Fig. 5b). ... The three-dimensional structural model of cgProB was generated through homology modelling using the SWISS-MODEL server40,41,42 (https://swissmodel.expasy.org/). The available structure of btProB (PDB code: 4q1t, which shares 38% sequence similar |
| 7 | 3kre | - | http://www.freepatentsonline.com/y2019/0209499.html | COMPOUNDS WEAKENING SAICAR SYNTHETASE ACTIVITY AND APPLICATIONS | 2019 | W Pan, W Zhu- US Patent App. 16/334,256, 2019 - freepatentsonline.com | 3R9R), Thermotoga maritime (1KUT), Clostridium perfringens (3NUA), Ehrlichiachaffeensis ( 3KRE ), Geobacilluskaustophilus (2YWV basis of the above results, the crystal structure conformations in Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) |
| 8 | 6dj8 | - | http://ej.kubagro.ru/2020/07/pdf/11.pdf | COMPARISON OF STRUCTURAL PROTEIN OF SILKWORM DENSOVIRUS BMDNV-1 WITH PROTEINS OF VIRUSES OF BACTERIA AND ARCHAEA TO STUDY THE POSSIBILITY OF FALSE POSITIVE ANSWERS IN THE ELISA - TESTING OF CATERPILLARS | 2020 | Antonovich ZA, Nazipova NN, ..., Scientific Journal of KubSAU , 2020 - ej.kubagro.ru | PDB . . , SMTL ID : 6dj8 .1 ( Structure of DNA polymerase III subunit beta from Borrelia burgdorferi) |
| 9 | 3i4t | 4dxl, 5v6d, 6c0e, 5tt0, 5ts3, 3ld9, 6b1p, 4h3z, 5ts2, 5cm7, 6c6b, 6b9u, 3und | https://digitalcommons.ncf.edu/theses_etds/5689/ | COMPARATIVE ANALYSIS OF CHARGE DISTRIBUTIONS IN HOMOLOGOUS THERMOPHILIC AND MESOPHILIC PROTEINS | 2019 | C Galvin - 2019 - digitalcommons.ncf.edu | the charge distributions in high quality crystal structures of 104 thermophilic and 118 mesophilic ( PDB entry 2CYA). Shown in cyan is a mesophilic homologue from humans ( PDB entry |
| 10 | 3e7d | 3uk1 | http://link.springer.com/article/10.1007/s00894-014-2136-5 | CH pi interactions in proteins: prevalence, pattern of occurrence, residue propensities, location, and contribution to protein stability | 2014 | M Kumar, PV Balaji - Journal of molecular modeling, 2014 - Springer | ... The coordinates of proteins included in the dataset were downloaded from the protein databank [33]. ... discoideum non-muscle type myosin-2 heavy chain (PDB id 3BZ9). ... Brucella abortus CobH, precorrin-8X methylmutase 3E7D D Phe16:CE1 Tyr12 2.83 1.84 172 66 ... |