We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4wgj | - | https://www.biorxiv.org/content/10.1101/2020.04.17.046482v1.abstract | Bartonella effector protein C mediates actin stress fiber formation via recruitment of GEF-H1 to the plasma membrane | 2020 | S Marlaire, C Dehio- BioRxiv, 2020 - biorxiv.org | On the 130 structural level, BepC displays the ancestral FIC-OB-BID architecture . However, 131 replacement of an acidic residue (D/E) by a lysine (K). The crystal structure of the 134 the - and -phosphates of the ATP analog ( PDB : 4WGJ ), thus functionally replacing 137 |
| 2 | 3ndn | - | http://mic.sgmjournals.org/content/160/Pt_8/1571.short | Bacterial methionine biosynthesis | 2014 | MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol | ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ... |
| 3 | 5i1f | - | https://www.jbc.org/article/S0021-9258(21)00156-3/abstract | Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth | 2021 | CH Wu, J Rismondo, RML Morgan, Y Shen- Journal of Biological, 2021 - ASBMB | Section of Structural and Synthetic Biology, Department of Infectious Disease, Imperial College London, London, United Kingdom The crystal structure of YngB revealed that the protein has the typical fold and all necessary active site features of a functional UGPase |
| 4 | 7jw0 | - | https://www.nature.com/articles/s41586-022-04980-y | BA. 2.12. 1, BA. 4 and BA. 5 escape antibodies elicited by Omicron infection | 2022 | Y Cao, A Yisimayi, F Jian, W Song, T Xiao, L Wang- Nature, 2022 - nature.com | Here, coupled with structural comparisons of the spike proteins, we show that BA.2.12.1, BA.4 and BA.5 (BA.4 and BA.5 are hereafter referred collectively to as BA.4/BA.5) exhibit similar ... b, Epitope of representative antibodies in group E3 (S2H97, PDB: 7M7W) and F1 (S304, PDB: 7JW0). Residues highlighted in red indicate mutated sites in Omicron variants. |
| 5 | 3ido | - | https://www.sciencedirect.com/science/article/pii/S2451929417303169 | A Water-Bridged Cysteine-Cysteine Redox Regulation Mechanism in Bacterial Protein Tyrosine Phosphatases | 2017 | JB Bertoldo, T Rodrigues, L Dunsmore, FA Aprile- Chem, 2017 - Elsevier | Using the FATCAT algorithm operating in rigid mode, we found that the structures of phosphatases from Vibrio cholera O395 (PDB: 4LRQ52), Entamoeba histolytica (PDB: 3IDO53), S. aureus (PDB: 3ROF54), ... and Geobacillus stearothermophilus (PDB: 4PIC) shared the highest structural similarity. |
| 6 | 3rqi | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00645 | A variable active site residue influences the kinetics of response regulator phosphorylation and dephosphorylation | 2016 | RM Immormino, RE Silversmith, RB Bourret - Biochemistry, 2016 - ACS Publications | ... reaction kinetics by altering access to the active site while not perturbing overall protein structure . ... Collectively, our biochemical and structural analyses indicate that position T+1 affects access to the ... (A) Surface representation of the E. coli CheY active site ( PDB entry 1fqw). ... |
| 7 | 4wny | - | https://www.biorxiv.org/content/10.1101/2020.10.03.324806v1.abstract | A Universal Stress Protein upregulated by hypoxia may contribute to chronic lung colonisation and intramacrophage survival in cystic fibrosis | 2020 | A O'Connor, R Berisio, M Lucey, K Schaffer, S McClean- bioRxiv, 2020 - biorxiv.org | abilities. 253 To identify structural determinants responsible for the different behaviours of USP76 and 254 USP92, in particular their different abilities to bind to epithelial cells, we used homology 255 modelling and analysed resulting structures the best template was the BupsA stress protein from Burkholderia pseudomallei (PDB code 563 4wny, seqid 69.2%). |
| 8 | 3sbx | - | http://amsdottorato.unibo.it/8793/ | Atypical LONELY GUY protein in Bordetella pertussis synthetizes a cytokinin-like compound negatively related to oxidative stress | 2019 | F Moramarco - 2019 - amsdottorato.unibo.it | BP1253 and LOGs, while Cluster omega to realize amino acid sequence alignment with specific type-I and type-II LOGs. The structural analysis were performed through PDB Viewer, either to develop the modeling of BP1253 that to determinate the coordinates of ... Characteristic of this M. marinum protein with PDB ID 3SBX is that it was crystallized in complex with AMP |
| 9 | 2kn9 | - | https://www.frontiersin.org/articles/10.3389/fpls.2018.01333/abstract | A two-headed monster to avert disaster: HBS1/SKI7 is alternatively spliced to build eukaryotic RNA surveillance complexes | 2018 | JO Brunkard, B Baker- Frontiers in plant science, 2018 - frontiersin.org | Recently, structural studies of the cytoplasmic RNA exosome in yeast and humans have revealed the crucial importance of SKI7 in bridging ... The N-terminus of SKI7 (through the patch 4-like motif) structure was modeled by Phyre24, which used structures of YY1-associated factor 2 (PDB 2D9G), HBV-associated factor (PDB 2CRC), Rubredoxin B (PDB 2KN9), NEMO CoZi (PDB 4OWF), and TAB3-NZF (PDB 3A9K). |
| 10 | 3ido | 3jvi | http://www.sciencedirect.com/science/article/pii/S0006291X14010183 | Atomic resolution crystal structure of< i> Vc</i> LMWPTP-1 from< i> Vibrio cholerae</i> O395: insights into a novel mode of dimerization in the Low molecular Weight | 2014 | S Nath, R Banerjee, U Sen - Biochemical and Biophysical Research , 2014 - Elsevier | ... Several structures of LMWPTP from eukaryotic organism such as human- HCPTPA (PDB: 5PNT) [4], bovine BPTPA (PDB: 1Z12) [5], mouse RPTPA (PDB: 2P4U) [6], yeast LTP1 (PDB: 1D1P) [7] and protozoan parasite Entameoba histolytica EhPtp (PDB: 3IDO) [8] are ... |