We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | - | https://www.sciencedirect.com/science/article/pii/S0006291X20314042 | Biochemical characterization of phosphoserine phosphatase SerB2 from Mycobacterium marinum | 2020 | E Pierson, J Wouters- Biochemical and Biophysical Research, 2020 - Elsevier | MmaSerB2 and MtbSerB2 are similar in their catalytic behaviour and architecture . Fig. 2. A) Structure of MmaSerB2 modeled by homology on the basis of M. avium SerB structure ( PDB 3P96 ). The individual domains are labelled. Active site residues are shown in red |
| 2 | 4lsm | - | http://www.sciencedirect.com/science/article/pii/S1570963914000296 | Biochemical characterisation of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from the liver fluke, Fasciola hepatica | 2014 | VL Zinsser, EM Hoey, A Trudgett, DJ Timson - Biochimica et Biophysica …, 2014 - Elsevier | ... other parasites, for example Plasmodium falciparum (PDB: 1YWG [52]; rmsd 1.226 Å over 8358equivalent atoms) Trypanosoma brucei (PDB: 2X0N, [53]; rmsd 2.009 Å over 8522 equivalentatoms) and Trypanosoma cruzi (PDB: 4LSM, note that this structure only contains ... |
| 3 | 3hhe | 3uw1 | https://www.sciencedirect.com/science/article/pii/S0141022920300971 | Biochemical and structural insights into an Ochrobactrum sp. CSL1 ribose-5-phosphate isomerase A and its roles in isomerization of rare sugars | 2020 | X Ju, X Xu, M Shen, X Mo, H Fan, L Liangzhi- Enzyme and Microbial, 2020 - Elsevier | thermophilus (TtRpiA, 1UJ5), Burkholderia thailandensis (BtRpiA, 3UW1), Bartonella henselae (BhRpiA, 3HHE ) and E. coli (EcRpiA, 1O8B) with ligand-binding structures in PDB , the sequence Homology modeling is an option to investigate the structure -activity relationship of |
| 4 | 3u0g | 4whx | https://www.sciencedirect.com/science/article/pii/S0300908418303626 | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum | 2019 | EY Bezsudnova, KM Boyko, AY Nikolaeva, YS Zeifman- Biochimie, 2019 - Elsevier | The results of independent MD simulations were qualitatively the same. 2.11. Structural analysis of the fold type IV PLP-dependent enzymes. Proteins which are structurally similar to TaTT were collected from the PDB bank using the structure similarity search module... similar short distance between the tyrosine OH group and the O3 atom of PLP was found in the BCAT structure from Burkholderia pseudomallei (PDB ID: 3U0G, 4WHX). |
| 5 | 4ix8 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12715 | Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two state folding mechanism in Leishmania | 2019 | S Sasidharan, P Saudagar- FEBS Open Bio, 2019 - Wiley Online Library | outlier region. PROSA score of PM0081305 was -8.56 and the score remained in the region of known native structures . The template structure that was taken for modeling ( PDB ID: 4IX8 ) had a PROSA score of -8.89. The structure |
| 6 | 4o2d | - | http://dx.plos.org/10.1371/journal.pone.0113568.g009 | Biochemical and Structural Characterization of Mycobacterial Aspartyl-tRNA Synthetase AspS, a Promising TB Drug Target | 2014 | SS Gurcha, V Usha, JAG Cox, K Fütterer, KA Abrahams… - PloS one, 2014 - dx.plos.org | ... The corresponding loop in E. coli AspRS is 11 amino acid residues shorter (Figure 7). Anapo-structure of Ms-AspS has recently been deposited in the PDB (entry 4O2D), in which thisloop assumes a very different conformation, forming a 2-turn α-helix and folding back ... |
| 7 | 3o0m | 3oj7 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5273447 | Biochemical and Biophysical Characterization, and 3d Structure Modeling of Human Hint3, a Hydrolase of the Hit Superfamily | 2025 | R Dolot, M Sirerant, A Mikoajczyk- Available at SSRN - papers.ssrn.com | Structure modelling of the HINT3 (Gly36) variant revealed that the enzyme exists mainly in absent in the structures of HINT1 and HINT2. Analysis of the HINT3 structure shows that there... In a first attempt, a homology model for HINT3 was generated based on eight crystallographic structures with the PDB IDs: 5UVM, 6D6J, 6CVS, 3OJ7, 3O0M, 4INC, 3TW2, and 3O1Z (see Table S2) using the MODELLER 10.5 software. |
| 8 | 3oec | - | http://www.jbc.org/content/286/42/37011.short | Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme | 2011 | S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB | ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ... |
| 9 | 4q12 | 4pzu | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b00506 | Biochemical Investigation of Rv3404c from Mycobacterium tuberculosis | 2017 | MM Dunsirn, JB Thoden, M Gilbert, HM Holden - Biochemistry, 2017 - ACS Publications | ... and 4Q12). Whereas this protein was suggested to be a sugar N-formyltransferase, ... RelevantX-ray data collection statistics are listed in Table 1. The structure was solved via molecularreplacement with PHASER21 and using PDB entry 4PZU as a search probe. ... |
| 10 | 3oc6 | - | http://www.mdpi.com/1422-0067/19/9/2518 | Biochemical Characterization and Structural Modeling of Fused Glucose-6-Phosphate Dehydrogenase-Phosphogluconolactonase from Giardia lamblia | 2018 | L Morales-Luna, H Serrano-Posada- International journal of, 2018 - mdpi.com | Recent Trends and Applications of Molecular Modeling in GPCRLigand Recognition and Structure -Based Drug Design. Choose your preferred view mode Giardia lamblia. G6PD. purification. recombinant expression. bioinformatics analysis. three-dimensional structure |