We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6VXX | 2020 | 1630 |
| 6VYB | 2020 | 1020 |
| 6WPS | 2020 | 165 |
| 6WPT | 2020 | 104 |
| 6NB6 | 2019 | 78 |
| 7K43 | 2021 | 65 |
| 7JX3 | 2020 | 60 |
| 7JW0 | 2021 | 42 |
| 7K4N | 2020 | 38 |
| 7JZU | 2020 | 38 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6uld | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.5c00996 | The Pyridoxal-5-Phosphate-Dependent Enzymes of Mycobacterium tuberculosis | 2026 | A Peracchi, B Baker- ACS Infectious Diseases, 2026 - ACS Publications | from the PDB database (sequences derived from structural studies). Initially this search yielded 87 hits, many of which, however, were not pertinent (such as enzymes involved in the |
| 2 | 6tys | 6u1t | https://www.sciencedirect.com/science/article/pii/S1476927125000143 | Molecular modelling and optimization of a high-affinity nanobody targeting the nipah virus fusion protein through in silico site-directed mutagenesis | 2025 | NMO Odchimar, ANG Dulay, FL Orosco- Computational Biology and, 2025 - Elsevier | Nipah virus (NiV) is a re-emerging zoonotic pathogen with a high mortality rate and no effective treatments, prompting the search for new antiviral strategies. While conventional antiviral ... Protein datasets of experimentally described monoclonal antibody (mAb; PDB ID: 7K14) and fragment antigen-binding antibodies (FAbs; PDB ID: 6T3F, 6U1T, 6TYS, 7UOP, 7UPA, 7UPB, 7UPD, 7UPK, and 7UP9) in complex with NiV pre-fusion protein (NiVF) and NiV pre-fusion apoprotein (PDB ID: 5EVM) were retrieved from the Prot |
| 3 | 5k85 | 5u29 | https://aaltodoc.aalto.fi/items/ef5fbad3-e949-4f46-8925-8ec058ca3b0b | Investigating the substrate promiscuity of acetyl-CoA synthetase from A. ethanivorans through a structural approach | 2025 | M Nikkanen - 2025 - aaltodoc.aalto.fi | Analogous and similarly spatially aligned residues residues seem to have the same function in Acs structures with PDB accession numbers 5u29 and 5k85 (figure 3) [27]. |
| 4 | 5k9f | - | https://www.nature.com/articles/s41419-025-08070-5 | TRIM17 promotes the progression of osteosarcoma by regulating PDK1 m6A modification-mediated AKT/mTOR pathway activation through ubiquitination of FTO | 2025 | W Liu, D Zheng, X Huang, Z Wei, Z Wei, W Guo- Cell death & disease, 2025 - nature.com | Download the three-dimensional structures of TRIM17 (ID: 6Z08) and FTO (ID: 5K9F ) from the PDB database, and remove the ligands and water molecules. The amino acid residues |
| 5 | 3fdz | 3gp5 | https://core.ac.uk/download/pdf/649473507.pdf | Revisiting the Plasmodium falciparum druggable genome using predicted structures | 2025 | K Godinez-Macias, D Chen, J Wallis- npj Drug Discovery, 2 (1), 2025 - core.ac.uk | To assess druggability evidence, we leveraged the AlphaFill database of predicted ligandtransplants based on homology of AlphaFold structures to all structures in the PDB REDO |
| 6 | 3o0m | 3oj7 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5273447 | Biochemical and Biophysical Characterization, and 3d Structure Modeling of Human Hint3, a Hydrolase of the Hit Superfamily | 2025 | R Dolot, M Sirerant, A Mikoajczyk- Available at SSRN - papers.ssrn.com | Structure modelling of the HINT3 (Gly36) variant revealed that the enzyme exists mainly in absent in the structures of HINT1 and HINT2. Analysis of the HINT3 structure shows that there... In a first attempt, a homology model for HINT3 was generated based on eight crystallographic structures with the PDB IDs: 5UVM, 6D6J, 6CVS, 3OJ7, 3O0M, 4INC, 3TW2, and 3O1Z (see Table S2) using the MODELLER 10.5 software. |
| 7 | 3ndn | - | https://www.nature.com/articles/s42003-025-08051-6 | A pH-dependent direct sulfhydrylation pathway is required for the pathogenesis of Mycobacterium tuberculosis | 2025 | VK Nain, V Barik, M Pandey, M Pareek- Communications, 2025 - nature.com | For system preparation, the crystal structure of putative O-succinyl homoserine sulfhydrylase of M. tuberculosis was retrieved from RCSB PDB 56 ( PDB -ID: 3NDN 57 ). The protein has 4 |
| 8 | 7luy | 6wct | https://www.nature.com/articles/s41467-025-61732-y | Comprehensive profiling of the catalytic conformations of human Guanylate kinase | 2025 | L Wang, Z Li, Y Xuan, J Qin, S Li, F Zhong- Nature, 2025 - nature.com | The atomic coordinates and structure factors for GMPK in its free form and substrate-bound forms generated in this study were deposited to the Protein Data Bank ( PDB ) ... The source data underlying Figs. 1i, 2c, 3i and Supplementary Fig. 6c–i, 9a–d, 11e are provided as a Source Data file. Previously published data for crystal structures of GMPK are available with PDB accession codes: 1EX6, 1EX7, 1LVG, 1S4Q, 1S96, 1ZNX, 1ZNW, 1GKY, 2ANB, 2ANC, 2QOR, 3TR0, 6WCT, 7LUY, 8PTS. |
| 9 | 6uww | - | https://onlinelibrary.wiley.com/doi/abs/10.1155/bmri/4196295 | In Silico Investigation of Phytochemicals From Clinically Tested Herbal Extracts as Potential Dihydrofolate Reductase Inhibitors for Buruli Ulcer | 2025 | AAK Mohamed, T Woasiedem- BioMed Research, 2025 - Wiley Online Library | original Schrdinger-prepared structure . This PDB structure , while Schrdinger retains the original biological residue numbering from the full-length protein sequence ( PDB ID: 6UWW ). |
| 10 | 6tys | 7ki6, 7ki4 | https://www.sciencedirect.com/science/article/pii/S016635422500141X | A monoclonal antibody targeting conserved regions of pre-fusion protein cross-neutralizes Nipah and Hendra virus variants | 2025 | T Li, H Xu, M Zhang, J Nie, B Liao, J Xie, Y Jiang, Y Liu- Antiviral Research, 2025 - Elsevier | The mAbs developed in this study and their conserved cross-neutralizing epitopes elucidated by structural analysis may contribute to the control of highly pathogenic HNV outbreaks. ... Local resolution estimation and filtering were performed using CryoSPARC. The cryo-EM structure of the NiV-F ectodomain (Protein Data Bank [PDB]: 6TYS) and crystal structure of the Fab (PDB: 7EJY) were aligned with the cryo-EM density map using UCSF Chimera |