We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6X79 | 2020 | 27 |
| 6BFU | 2017 | 26 |
| 7JZM | 2020 | 26 |
| 6WS6 | 2020 | 26 |
| 6TYS | 2020 | 25 |
| 7RAL | 2021 | 24 |
| 7LY3 | 2021 | 23 |
| 7JV2 | 2021 | 23 |
| 3P96 | 2010 | 21 |
| 6Q05 | 2020 | 21 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5k85 | 5u29 | https://aaltodoc.aalto.fi/items/ef5fbad3-e949-4f46-8925-8ec058ca3b0b | Investigating the substrate promiscuity of acetyl-CoA synthetase from A. ethanivorans through a structural approach | 2025 | M Nikkanen - 2025 - aaltodoc.aalto.fi | Analogous and similarly spatially aligned residues residues seem to have the same function in Acs structures with PDB accession numbers 5u29 and 5k85 (figure 3) [27]. |
| 2 | 5k9f | - | https://www.nature.com/articles/s41419-025-08070-5 | TRIM17 promotes the progression of osteosarcoma by regulating PDK1 m6A modification-mediated AKT/mTOR pathway activation through ubiquitination of FTO | 2025 | W Liu, D Zheng, X Huang, Z Wei, Z Wei, W Guo- Cell death & disease, 2025 - nature.com | Download the three-dimensional structures of TRIM17 (ID: 6Z08) and FTO (ID: 5K9F ) from the PDB database, and remove the ligands and water molecules. The amino acid residues |
| 3 | 3fdz | 3gp5 | https://core.ac.uk/download/pdf/649473507.pdf | Revisiting the Plasmodium falciparum druggable genome using predicted structures | 2025 | K Godinez-Macias, D Chen, J Wallis- npj Drug Discovery, 2 (1), 2025 - core.ac.uk | To assess druggability evidence, we leveraged the AlphaFill database of predicted ligandtransplants based on homology of AlphaFold structures to all structures in the PDB REDO |
| 4 | 6uhw | - | https://arxiv.org/abs/2507.14156 | All-atom inverse protein folding through discrete flow matching | 2025 | K Yi, K Jamali, SHW Scheres- arXiv preprint arXiv:2507.14156, 2025 - arxiv.org | structures for the sequences generated by both ADFLIP and LigandMPNN. We assessed structural similarity to the reference structure from the PDB scores from the structure prediction ( |
| 5 | 4iuj | - | https://www.nature.com/articles/s41589-024-01813-z | PROTAR Vaccine 2.0 generates influenza vaccines by degrading multiple viral proteins | 2025 | C Zhang, J Hou, Z Li, Q Shen, H Bai, L Chen- Nature Chemical, 2025 - nature.com | Data Bank ( PDB ) under accession numbers 4WSB, 4WSB, 4IUJ , 2IQH, 7JM3 and 4OPH, respectively. The 3D structure of influenza B viral PA protein was deposited to the PDB under |
| 6 | 7ral | - | https://www.science.org/doi/abs/10.1126/scitranslmed.adn5651 | Nonstabilized SARS-CoV-2 spike mRNA vaccination induces broadly neutralizing antibodies in nonhuman primates | 2025 | RD Malewana, V Stalls, A May, X Lu- Science Translational, 2025 - science.org | Our structural studies identified the DH1193 epitope as one of these conserved epitopes on accession numbers 8DPZ, 8DTK, and 7RAL in the PDB . Biospecimens, proteins, DNA, and |
| 7 | 3o0m | 3oj7 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5273447 | Biochemical and Biophysical Characterization, and 3d Structure Modeling of Human Hint3, a Hydrolase of the Hit Superfamily | 2025 | R Dolot, M Sirerant, A Mikoajczyk- Available at SSRN - papers.ssrn.com | Structure modelling of the HINT3 (Gly36) variant revealed that the enzyme exists mainly in absent in the structures of HINT1 and HINT2. Analysis of the HINT3 structure shows that there... In a first attempt, a homology model for HINT3 was generated based on eight crystallographic structures with the PDB IDs: 5UVM, 6D6J, 6CVS, 3OJ7, 3O0M, 4INC, 3TW2, and 3O1Z (see Table S2) using the MODELLER 10.5 software. |
| 8 | 4qfh | - | https://www.cell.com/structure/fulltext/S0969-2126(25)00223-0 | CryoEM-enabled visual proteomics reveals de novo structures of oligomeric protein complexes | 2025 | Y Shen, AO Maggiolo, T Zhang, RA Warmack- Structure, 2025 - cell.com | maps by comparison to experimental structures in the Protein DataBank ( PDB ) or the now extensive database of AlphaFold-predicted protein structures . Using similar approaches, we ... independent of the proteomic results, DeepTracer and ModelAngelo models were also compared against the Protein DataBank (PDB) using the DALI server,21 and the top hits were PDB: 4QFH (T. cruzi Pgi)17 and PDB: 3NBU (E.coli Pgi),30 respectively, further confirming the identified structure as Pgi. |
| 9 | 6uj5 | - | https://www.cell.com/cell-chemical-biology/abstract/S2451-9456(25)00130-8 | Pantothenate kinase is an effective target for antifungal therapy | 2025 | J Regan, C DeJarnette, P Reitler, S Gihaz- Cell Chemical, 2025 - cell.com | cerevisiae experimental structure ( PDB : 6UJ5 ), we performed molecular docking analysis with MNS. These studies suggest that the MNS binding site overlaps with that of pantothenate |
| 10 | 6uww | - | https://onlinelibrary.wiley.com/doi/abs/10.1155/bmri/4196295 | In Silico Investigation of Phytochemicals From Clinically Tested Herbal Extracts as Potential Dihydrofolate Reductase Inhibitors for Buruli Ulcer | 2025 | AAK Mohamed, T Woasiedem- BioMed Research, 2025 - Wiley Online Library | original Schrdinger-prepared structure . This PDB structure , while Schrdinger retains the original biological residue numbering from the full-length protein sequence ( PDB ID: 6UWW ). |