We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3RD5 | 2011 | 20 |
| 3UAM | 2011 | 20 |
| 3V7O | 2012 | 20 |
| 4F2N | 2012 | 20 |
| 3EOO | 2008 | 20 |
| 4IX8 | 2014 | 19 |
| 3SDO | 2011 | 19 |
| 6NB3 | 2019 | 18 |
| 3GWC | 2009 | 18 |
| 7JV6 | 2021 | 18 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7ki4 | 7ki6 | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/advs.202501996 | Potent Crossneutralizing Antibodies Reveal Vulnerabilities of Henipavirus Fusion Glycoprotein | 2025 | Y Ren, P Fan, X Zhang, T Fang, Z Chen- Advanced, 2025 - Wiley Online Library | structure of LayV F ( PDB ID: 8FEL). The root mean square deviation between the model and the reference LayV F or an incomplete postfusion NiV F ( PDB from the PDB database onto This study also used 6TYS, 7KI4, 7KI6, 7UOP, 7UP9, 7UPA, 7UPK, 7UPB, 7UPD, 6T3F, 8FEL, 8DMJ, and 7FAB from the Protein Data Bank. The data that support the findings of this study are available from the corresponding author upon reasonable request. |
| 2 | 7luy | 6wct | https://www.nature.com/articles/s41467-025-61732-y | Comprehensive profiling of the catalytic conformations of human Guanylate kinase | 2025 | L Wang, Z Li, Y Xuan, J Qin, S Li, F Zhong- Nature, 2025 - nature.com | The atomic coordinates and structure factors for GMPK in its free form and substrate-bound forms generated in this study were deposited to the Protein Data Bank ( PDB ) ... The source data underlying Figs. 1i, 2c, 3i and Supplementary Fig. 6c–i, 9a–d, 11e are provided as a Source Data file. Previously published data for crystal structures of GMPK are available with PDB accession codes: 1EX6, 1EX7, 1LVG, 1S4Q, 1S96, 1ZNX, 1ZNW, 1GKY, 2ANB, 2ANC, 2QOR, 3TR0, 6WCT, 7LUY, 8PTS. |
| 3 | 7jzl | 7jzn | https://pmc.ncbi.nlm.nih.gov/articles/PMC12308813/ | Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins | 2025 | YF e Silva, HH Fokoue- Journal of Chemical, 2025 - pmc.ncbi.nlm.nih.gov | Such information was related to each PDB -ID, but within the trimeric bound structures , we evaluate whether each protomer has interactions with the ligands by calculating the number of |
| 4 | 6vxx | 6vyb | https://periodicals.karazin.ua/biophysvisnyk/article/view/26227 | In silico analysis of binding sites for potential inhibitors targeting the complex of furin protease | 2025 | NV Khmil, AV Shestopalova- Biophysical, 2025 - periodicals.karazin.ua | structures of the S protein ( PDB IDs: 6VYB, 6VXX , 7VHJ) from the Protein Data Bank (www.rcsb.org ) were docked with furin protease ( PDB ID: onto 6VYB-5JXG, 6VXX -5JXG, and 7VHJ- |
| 5 | 7jv4 | 7so9, 7soe, 7ra8, 7sob | https://search.proquest.com/openview/5483cc549d493a55c598e1f12feeae1b/1?pq-origs... | Bridging Experimental and Computational Approaches for Protein Structure Analysis and Dynamic Modeling | 2025 | D Stepanenko - 2025 - search.proquest.com | FPPR cluster analysis applied to spike PDB structures . The 1 value for the corresponding PDB structure . . . . . . 88 5.8 1 value for the corresponding PDB structure . 92 xv 5.10 Scatter |
| 6 | 7jzn | - | https://www.cell.com/heliyon/fulltext/S2405-8440(25)01465-3?uuid=uuid%3Acd981904... | Novel method for prioritizing protein binding sites using pocket analysis and MD simulations | 2025 | AD Biswas, E Sabato, S Vittorio, P Aletayeb, A Pedretti- Heliyon, 2025 - cell.com | We picked a list of 8 resolved SARS-CoV-2 spike structures from the PDB by & 3 of 7JZN . (B) The spike protein conformational states are superimposed for each pair, with one structure |
| 7 | 6cja | - | https://www.nature.com/articles/s41589-025-01954-9 | Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme | 2025 | JB Hedges, JA Marchand, C Calv-Tusell- Nature Chemical, 2025 - nature.com | PDB 6CJA , we then superposed the structure of the second adjacent monomer from the PDB 6CJA catalytic dimer onto the structure residues present in the structure of the N terminus of |
| 8 | 3o0m | 3oj7 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5273447 | Biochemical and Biophysical Characterization, and 3d Structure Modeling of Human Hint3, a Hydrolase of the Hit Superfamily | 2025 | R Dolot, M Sirerant, A Mikoajczyk- Available at SSRN - papers.ssrn.com | Structure modelling of the HINT3 (Gly36) variant revealed that the enzyme exists mainly in absent in the structures of HINT1 and HINT2. Analysis of the HINT3 structure shows that there... In a first attempt, a homology model for HINT3 was generated based on eight crystallographic structures with the PDB IDs: 5UVM, 6D6J, 6CVS, 3OJ7, 3O0M, 4INC, 3TW2, and 3O1Z (see Table S2) using the MODELLER 10.5 software. |
| 9 | 6mtz | - | https://www.nature.com/articles/s41586-024-08417-6 | Structures and mechanism of condensation in non-ribosomal peptide synthesis | 2025 | A Pistofidis, P Ma, Z Li, K Munro, KN Houk- Nature, 2025 - nature.com | the two parts with protein ligation 15, and solved the structures of the substrate-and product-bound states. The structures show the precise orientation of the megaenzyme preparing ... Initial phases were calculated by molecular replacement in Phaser v.2.9.0 using the full chain A (with domains F1A1T1C2A2T2) of Protein Data Bank (PDB) 6MTZ (ref. 14), followed by iterative refinement in the programs Phenix |
| 10 | 6d9y | - | https://academic.oup.com/bbb/advance-article-abstract/doi/10.1093/bbb/zbaf015/79... | Crystal structure of l-2-keto-3-deoxyrhamnonate 4-dehydrogenase involved in the non-phosphorylating pathway of l-rhamnose metabolism by bacteria | 2025 | M Akagashi, S Watanabe- Bioscience, Biotechnology, and, 2025 - academic.oup.com | The closest related structure in the Protein Data Bank ( PDB ) is the hypothetical protein of Burkholderia phymatum ( PDB ID 6D9Y ); rmsd of 0.5 A over 237 C atoms with a sequence |