We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3D64 | 2008 | 14 |
| 7JV6 | 2021 | 14 |
| 3CXK | 2008 | 14 |
| 3MEN | 2010 | 14 |
| 4WI1 | 2016 | 14 |
| 3R20 | 2011 | 14 |
| 4DLP | 2012 | 14 |
| 4ODJ | 2014 | 14 |
| 3DMO | 2008 | 14 |
| 3GVG | 2009 | 13 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 2 | 4g5d | - | https://www.degruyter.com/document/doi/10.1515/chem-2024-0005/html | Anti-parasitic activity and computational studies on a novel labdane diterpene from the roots of Vachellia nilotica | 2024 | NF Al-Tannak, JV Anyam, EY Santali, AI Gray- Open, 2024 - degruyter.com | structure with proteins was retrieved from a protein data bank ( PDB ) with codes: 2P7U and 4G5D agents and a structural basis for drug design) ( structures of prostaglandin F synthase |
| 3 | 8dya | - | https://www.nature.com/articles/s41467-024-49656-5 | A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines | 2024 | J Lee, C Stewart, A Schfer, EM Leaf, YJ Park- Nature, 2024 - nature.com | (Right) SARS-CoV-2 S ( PDB 6VXX) colored by sequence conservation across multiple the C-44 cryoEM structure previously determined with splayed open apex 17 ( PDB 8DYA ). c Size- |
| 4 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 5 | 6bfu | - | https://www.nature.com/articles/s41467-024-49693-0 | Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein | 2024 | W Du, O Debski-Antoniak, D Drabek- Nature, 2024 - nature.com | the antigenic structure of the PDCoV S protein. Through functional and structural characterization The PDB file of PDCoV spike protein ( PDB ID: 6BFU ) and SARS-CoV-2 spike protein ( |
| 6 | 7kds | 7kvy, 7mmz, 8sf3 | https://www.nature.com/articles/s41557-024-01646-2 | Enzymatic synthesis of azide by a promiscuous N-nitrosylase | 2024 | A Del Rio Flores, R Zhai, DW Kastner, K Seshadri- Nature Chemistry, 2024 - nature.com | To shed light on the catalytic mechanism of Tri17, we solved the X-ray crystal structure of Tri17 at a resolution of 2.4 in its apo form and generated structural models with AlphaFold2 ( |
| 7 | 6xk2 | - | https://www.nature.com/articles/s41467-024-50955-0 | Accurate prediction of protein function using statistics-informed graph networks | 2024 | YJ Jang, QQ Qin, SY Huang, ATJ Peter- Nature, 2024 - nature.com | The scores are mapped to color the MgIA 3D structure ( PDB ID: 6IZW) from lower (blue) to higher (red), GDP is shown with sphere in yellow, SO 4 in stick in cyan, and Mg 2+ ion in a ... The activation scores are mapped to the tertiary structures of nine proteins, including ... Tyrosine-protein kinase BTK (TpK-BTK, PDB ID: 6W8I), Ribokinase (PDB ID: 6XK2), alpha-lactalbumin (αLA, PDB ID: 1HFX) |
| 8 | 7ral | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10769253/ | Broadly neutralizing antibody induction by non-stabilized SARS-CoV-2 Spike mRNA vaccination in nonhuman primates | 2023 | RD Malewana, V Stalls, A May, X Lu, DR Martinez- bioRxiv, 2023 - ncbi.nlm.nih.gov | Our structural studies identified the DH1193 epitope as one of these conserved epitopes on in PDB : 8DPZ, 8DTK, 7RAL . Materials are available with a Materials transfer agreement. |
| 9 | 6n1f | - | https://journals.asm.org/doi/abs/10.1128/mbio.00408-23 | Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling | 2023 | P Mutz, W Resch, G Faure, TG Senkevich, EV Koonin- Mbio, 2023 - Am Soc Microbiol | Given that all of the models in this work were compared both to the PDB and to the large database of AlphaFold2 ... OPG20 (C10L), OPG31 (C4L), and OPG165 (A37R) are homologs of hydroxylases.... the 2OG-Fe(II) Oxygenase family of Burkholderia pseudomallei (6n1f |
| 10 | 7so9 | - | https://www.nature.com/articles/s41421-023-00535-1 | Comprehensive structural analysis reveals broad-spectrum neutralizing antibodies against SARS-CoV-2 Omicron variants | 2023 | X Chi, L Xia, G Zhang, X Chi, B Huang, Y Zhang- Cell Discovery, 2023 - nature.com | with multiple structures , we selected the subcomplex deposited earliest in the PDB database ID: 7SO9 ) were manually refined based on the focused-refined cryo-EM map. Each residue |