We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3MEQ | 2010 | 15 |
| 6NB8 | 2019 | 15 |
| 7LY2 | 2021 | 15 |
| 5DVW | 2015 | 15 |
| 7KNA | 2021 | 15 |
| 3I4E | 2009 | 14 |
| 3D64 | 2008 | 14 |
| 3R20 | 2011 | 14 |
| 3CXK | 2008 | 14 |
| 3DMO | 2008 | 14 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7stz | - | https://openreview.net/forum?id=1p9hQTbjgo | Minifold: Simple, fast, and accurate protein structure prediction | 2025 | J Wohlwend, M Reveiz, M McPartlon- on Machine Learning, 2025 - openreview.net | an efficient architecture for protein structure prediction which layers, and replaces the structure module with a lightweight When compared against the original architecture , MiniFold |
| 2 | 7jw0 | 7k45, 7lxy, 7so9, 7sob | https://academic.oup.com/ve/article-abstract/11/1/veaf027/8159764 | Comprehensive analysis of SARS-CoV-2 Spike evolution: epitope classification and immune escape prediction | 2025 | NFB Teruel, M Crown, R Rajsbaum, M Bashton- Virus, 2025 - academic.oup.com | to epitope 3 from structures 7A5R, 6W41, 7LM8, 7S5Q, 7JW0 , 7X1M, and 7R6X. Comparing all the vectors of interaction for S309, we see that one Kappa structure ( PDB 7SOB), from |
| 3 | 7kna | - | https://pmc.ncbi.nlm.nih.gov/articles/PMC12265162/ | A single residue change only differing by an atomic group can drive imprinting to influenza | 2025 | J Sun, G Jo, CA Troxell, Y Fu, R Hoezl, H Lv- Research, 2025 - pmc.ncbi.nlm.nih.gov | For model building, the AlphaFold3-predicted model and the cryo-EM structure of Mich15 H1 ( PDB : 7KNA ) were used as the initial models for HK14 H3 and Mich15 H1, respectively. |
| 4 | 7jzl | 7jzm, 7jzn, 7jzu | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/adhm.202503487 | Multivalent Protein Nanorings for Broad and Potent SARSCoV2 Neutralization | 2025 | M Behbahanipour, C Goldin, CA Prato- Advanced, 2025 - Wiley Online Library | ), their structural orientation within each differs. Both LCB1 and LCB3 are small 3-helix bundles, but whereas LCB1 ( PDB ID 7JZL ) binds in an up-down-up orientation, LCB3 ( PDB ID |
| 5 | 6d9y | - | https://academic.oup.com/bbb/advance-article-abstract/doi/10.1093/bbb/zbaf015/79... | Crystal structure of l-2-keto-3-deoxyrhamnonate 4-dehydrogenase involved in the non-phosphorylating pathway of l-rhamnose metabolism by bacteria | 2025 | M Akagashi, S Watanabe- Bioscience, Biotechnology, and, 2025 - academic.oup.com | The closest related structure in the Protein Data Bank ( PDB ) is the hypothetical protein of Burkholderia phymatum ( PDB ID 6D9Y ); rmsd of 0.5 A over 237 C atoms with a sequence |
| 6 | 7jzu | - | https://www.pnas.org/doi/abs/10.1073/pnas.2413465122 | Structure-guided engineering of a mutation-tolerant inhibitor peptide against variable SARS-CoV-2 spikes | 2025 | S Nakamura, Y Tanimura, R Nomura, H Suzuki- Proceedings of the, 2025 - pnas.org | The initial phase was determined by molecular replacement with Phaser (48) using the RBD structure ( PDB code 7JZU ) as the search template. The atomic model was rebuilt by manual |
| 7 | 7kqa | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.5c00284 | SH N Contacts between Side Chains of Cys and Backbone Nitrogen Atoms in Proteins Are Weak Interactions and Not Hydrogen Bonds | 2025 | P Singh, R Sankararamakrishnan- Biochemistry, 2025 - ACS Publications | We retained the same internal parameters found in PDB structures for all non-self-contacting Cys involved in potential SHN hydrogen bonds. When B3LYP was used, only 13 to 23 |
| 8 | 4f40 | 4gie | https://www.mdpi.com/1424-8247/18/10/1489 | Computational Investigation of the Potential Antileishmanial Mechanism of the Nitroindazole Derivative VATR131 | 2025 | O Casanova-Alvarez, N Mollineda-Diogo- Pharmaceuticals, 2025 - mdpi.com | structural damage to the parasite, further supporting their therapeutic potential [17]. VATR131s leishmanicidal activity, causing both structural and ultrastructural damage to the parasite [ |
| 9 | 7ki4 | 7ly2, 7lxz, 7soc, 7lxx | https://search.proquest.com/openview/ff5b45930cd332ac1b1ca9ca202952cb/1?pq-origs... | Energetic Characterization of Interactions Between N-Linked Glycans and the Underlying Protein Surface | 2025 | E Gazaway - 2025 - search.proquest.com | sites by surveying experimental glycoprotein structures available in the PDB . For example, structure present in the glycans of the core-fucosylated glycan dataset mined from the PDB |
| 10 | 7kna | - | https://www.nature.com/articles/s41551-025-01411-x | Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibodyviral glycoprotein complexes | 2025 | LM Sewall, R de Paiva Froes Rocha- Nature Biomedical, 2025 - nature.com | well as structural insight into sites of vulnerability 4 ; however, solving structures of individual Models of HA H1 ( PDB 7KNA ) and a human polyclonal Fab with a polyalanine backbone |