We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4ZJU | 2015 | 13 |
| 3O0M | 2010 | 13 |
| 3SBX | 2011 | 13 |
| 4O3V | 2014 | 13 |
| 3CEZ | 2008 | 13 |
| 3GVG | 2009 | 13 |
| 3KRS | 2009 | 13 |
| 7RA8 | 2021 | 13 |
| 3I4E | 2009 | 13 |
| 3FVB | 2009 | 13 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ywj | 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb | https://www.sciencedirect.com/science/article/pii/S0304416523000181 | The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets | 2023 | S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier | (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q), |
| 2 | 3tcq | - | https://www.mdpi.com/1422-0067/24/7/6298 | Cheminformatics-Based Study Identifies Potential Ebola VP40 Inhibitors | 2023 | E Broni, C Ashley, J Adams, H Manu, E Aikins- International Journal of, 2023 - mdpi.com | Modeller generated five models using the 3D structures of 3TCQ and 7K5L as templates. structure of the VP40 with PDB ID 1ES6 as the parent template for modelling. 1ES6s structure |
| 3 | 7sh3 | - | https://www.nature.com/articles/s42004-023-01029-7 | Peptide binder design with inverse folding and protein structure prediction | 2023 | P Bryant, A Elofsson- Communications Chemistry, 2023 - nature.com | ProteinMPNN was trained on assemblies in the PDB these to unique PDB IDS, one finds 4086 PDB IDS in total. from all PDB IDs and extracted interacting pairs (one per PDB ID) based ... To see if the modification of the AF protocol described here can distinguish these binders, we analyse sequences tested against four different receptor proteins with solved receptor-binder structures ... IL7Ra: https://www.rcsb.org/structure/7OPB and VirB8:https://www.rcsb.org/structure/7SH3). |
| 4 | 6mc0 | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4655406 | Synthesis and Kinetic Evaluation of Phosphomimetic Inhibitors Targeting Type B Ribose-5-Phosphate Isomerase from Mycobacterium Tuberculosis | 2023 | S Courtiol-Legourd, S Mariano, J Foret- Mycobacterium - papers.ssrn.com | of SoRpiA has not yet been presented, but that of the chloroplastic enzyme ( PDB code 6ZXT) [ An RpiA structure with R5P/Ru5P bound and with excellent resolution is 6MC0 (Legionella |
| 5 | 7ral | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10769253/ | Broadly neutralizing antibody induction by non-stabilized SARS-CoV-2 Spike mRNA vaccination in nonhuman primates | 2023 | RD Malewana, V Stalls, A May, X Lu, DR Martinez- bioRxiv, 2023 - ncbi.nlm.nih.gov | Our structural studies identified the DH1193 epitope as one of these conserved epitopes on in PDB : 8DPZ, 8DTK, 7RAL . Materials are available with a Materials transfer agreement. |
| 6 | 3gaf | - | https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 | Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability | 2023 | Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com | -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42], |
| 7 | 3k9g | 3s6l, 3oib, 3km3, 3njb, 3o2e | https://scripts.iucr.org/cgi-bin/paper?nz5010 | Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment | 2023 | NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org | The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at |
| 8 | 7kno | 5vpv, 7l3q, 7kvy, 7knp, 7kq6, 5u29, 5k85, 5ifi, 5k8f | https://search.proquest.com/openview/f05e6d587d92dab80626ff10c57e339a/1?pq-origs... | Discovery of Acetyl CoA Synthetase and SARS-CoV-2 Protease Inhibitors | 2023 | TE Esan - 2023 - search.proquest.com | Small molecule compounds were identified as a hit in an NMR-based screening, which was followed by validation with biochemical and structural characterization. Fragments were |
| 9 | 6xmy | - | https://www.nature.com/articles/s41467-023-40928-0 | Protein engineering and iterative multimodule optimization for vitamin B6 production in Escherichia coli | 2023 | L Liu, J Li, Y Gai, Z Tian, Y Wang, T Wang, P Liu- Nature, 2023 - nature.com | docked into the binding pocket according to the crystal structure PDB 1PS6 and PDB 6XMY The crystal structure of PdxJ ( PDB 1M5W) showed that the octameric enzyme possesses |
| 10 | 5vwm | 6ote, 6pth, 6cfp | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4633401 | Unveiling Success Determinants for Amb-Assisted Phase Expansion of Fusion Proteins in Arp/Warp | 2023 | MC Cardona-Echavarra, C Santilln - papers.ssrn.com | In this study, the PDB was mined to obtain an up-to-date list of the FP crystallographic 103 structures of the most used protein tags: maltose binding protein (MBP), thioredoxin (TRX), |