We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3O0M | 2010 | 11 |
| 3EK2 | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| 4LGV | 2013 | 11 |
| 4G50 | 2012 | 11 |
| 6Q06 | 2020 | 11 |
| 3K2H | 2009 | 11 |
| 3I3R | 2009 | 11 |
| 4DLP | 2012 | 11 |
| 5CY4 | 2015 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6mg6 | - | https://www.researchsquare.com/article/rs-561386/latest.pdf | Genome Mining, Phylogenetic and Structural Analysis of Bacterial Nitrilases for the Biodegradation of Nitrile Compounds | 2021 | R Salwan, V Sharma, S Das - 2021 - researchsquare.com | ( PDB :1EMS), Helicobacter pylori ( PDB : 6MG6 ), Mus musculus ( PDB : 2W1V), Pyrococcus abyssi ( PDB : 3WUY) has already been reported. However, with most of the nitrilases, the crystal structure had been resolved, came |
| 2 | 6nb3 | 6q04 | https://internal-journal.frontiersin.org/articles/10.3389/fmolb.2021.607443/full | Molecular mechanisms behind anti SARS-CoV-2 action of lactoferrin | 2021 | M Miotto, L Di Rienzo, L B- Frontiers in, 2021 - internal-journal.frontiersin.org | Structural studies determined the structures of such protein both in free form and bound to ACE2 of the ACE2 receptor with SARS-CoV-2 spike receptor-binding domain, RBD ( PDB id: 6m17 ... The 10 structural analogs (as identified by TM-align Zhang and Skolnick (2005)) found by I-tasser are PDB id: 5X58, 6NZK, 6NB3, 3JCL, 5I08, 6CV0, 5SZS, 5WRG , 6UTK, 6B7N. The first (out of five) model returned |
| 3 | 6aqz | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26080 | Crystal structure of a GDP6OMe4ketoLxyloheptose reductase from Campylobacter jejuni | 2021 | JH Kim, A Hofmann, JS Kim- Proteins: Structure, Function, and, 2021 - Wiley Online Library | Page 9. Discussion Comparison with other related proteins The crystal structure of Camylobacter MlghC revealed a two-domain architecture commonly found in 36.7; rmsd 1.9 ) and Naegleria fowleri ( PDB ID 6AQZ ; Z-score 34.3; rmsd 2.3 ), and GDP-4-keto-6 |
| 4 | 4f2n | 4f40 | https://www.recima21.com.br/index.php/recima21/article/view/148 | DOCKING MOLECULAR E AVALIAO DA ATIVIDADE ANTILEISHMANIA IN VITRO DE UM COMPLEXO METLICO DE RUTNIO COM EPIISOPILOTURINA E | 2021 | J Arajo- -Revista Cientfica Multidisciplinar-ISSN 2675-6218, 2021 - recima21.com.br | The 3D protein structures of L. major targets were obtained from the Protein Data Bank ( PDB ) database with codes 1e7w (Pteridine reductase), 5nzg (UDP-glucose Pyrophosphorylase), 5g20 (Glycyl Peptide N-tetradecanoyltransferase), 5c7p Enzimas Identificao PDB 4F2N |
| 5 | 3qhx | 3qi6 | https://www.mdpi.com/2079-3197/9/3/32 | Pharmacophore-Guided Identification of Natural Products as Potential Inhibitors of Mycobacterium ulcerans Cystathionine -Synthase MetB | 2021 | SK Kwofie, NNO Dolling, E Donkoh, GM Laryea, L Mosi- Computation, 2021 - mdpi.com | For the study, chain A of each 3D crystal structural coordinate file was used. Two experimentally elucidated structures of CGS MetB from M. ulcerans are available. The structure with PDB ID 3QI6 is bound covalently to PLP (cofactor) and the other with PDB ID 3QHX is bound |
| 6 | 6brl | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jimd.12387 | Metabolic impact of pathogenic variants in the mitochondrial glutamyltRNA synthetase EARS2 | 2021 | M Ni, LF Black, C Pan, H Vu, J Pei, B Ko- Journal of Inherited, 2021 - Wiley Online Library | 3A and B). Structural modeling of human EARS2 was obtained from the SWISS-MODEL Page 10. repository (Bienert et al 2017) based on the crystal structure of the glutamyl-tRNA synthetase from Elizabethkingia meningosepticum ( PDB : 6brl ), and superimposed on the crystal |
| 7 | 6wsa | 3ppi, 3oxk, 3kcq, 4w5k, 3sgw, 4rgb, 4ghk | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0257318 | Principal component analysis of alpha-helix deformations in transmembrane proteins | 2021 | A Bevacqua, S Bakshi, Y Xia- PloS one, 2021 - journals.plos.org | 6tt4, 6txw, 6tzj, 6uqw, 6v47, 6vbj, 6vie, 6vjd, 6vmz, 6vnw, 6w1w, 6w2x, 6wok, 6wsa , 6x1q, 6x2m and the contribution of each physical deformation to the overall flexibility of the secondary structure N -helices of a given length (L residues) were collected from PDB entries (See |
| 8 | 6wpt | 7jw0, 7jv6, 7k4n, 7k43, 7jvc | https://www.nature.com/articles/s41422-021-00487-9 | Structural basis for bivalent binding and inhibition of SARS-CoV-2 infection by human potent neutralizing antibodies | 2021 | R Yan, R Wang, B Ju, J Yu, Y Zhang, N Liu, J Wang- Cell research, 2021 - nature.com | Neutralizing monoclonal antibodies (nAbs) to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) represent promising candidates for clinical intervention against coronavirus disease 2019 (COVID-19). We isolated a large number of nAbs from SARS-CoV-2-infected ... Besides, there are some special antibodies that can compete ACE2 binding while bind to RBD with different patterns. We assigned these antibodies into class IV which contains S309 (PDB code: 6WPT), C110 (PDB code: 7K8V) and C135 (PDB code |
| 9 | 7k4n | - | https://www.nature.com/articles/s41564-021-00972-2 | Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail | 2021 | J Dong, SJ Zost, AJ Greaney, TN Starr- Nature, 2021 - nature.com | Understanding the molecular basis for immune recognition of SARS-CoV-2 spike glycoprotein antigenic sites will inform the development of improved therapeutics. We determined the structures of two human monoclonal antibodiesAZD8895 and AZD1061which form the basis ... A comparison of the cryo-EM structure of S2E12 in complex with the S glycoprotein (PDB ID: 7K4N) suggests that the mAb S2E12 likely uses nearly identical antibody–RBD interactions as those of AZD8895 |
| 10 | 5vn4 | - | https://www.nature.com/articles/s41598-021-91747-6 | Acyclic nucleoside phosphonates with adenine nucleobase inhibit Trypanosoma brucei adenine phosphoribosyltransferase in vitro | 2021 | E Doleelov, T Klejch, P paek, M Slapnikov- Scientific Reports, 2021 - nature.com | Acyclic nucleoside phosphonates (ANPs) represent a group of compounds whose biological activity is based on their structural resemblance to the natural nucleotides 8,9 . Their flexibility enables them to adopt a conformation suitable for the interaction with the active site ... To assess the probable binding modes of the most potent inhibitors, docking calculations were performed. Since T. brucei APRT1 has been slightly explored so far, the only experimental structure that is available for this enzyme |