We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LXZ | 2021 | 10 |
| 3NRR | 2010 | 10 |
| 3IDO | 2009 | 10 |
| 7N8I | 2021 | 10 |
| 2KN9 | 2009 | 10 |
| 3IXC | 2009 | 10 |
| 7LXX | 2021 | 10 |
| 3ENK | 2008 | 10 |
| 3MEQ | 2010 | 10 |
| 3QI6 | 2011 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v7o | 3tcq | http://f1000research.com/articles/3-251/v1 | Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions | 2014 | S Chakraborty, B Rao, B Asgeirsson… - …, 2014 - f1000research.com | ... 1EBO,2EBO,3VE0,3CSY.. 2I8B,3V7O 3FKE,3L25,4LG2,4IBK... ... A PDB database search usingthe keyword 'Ebola' generate 146 single chained proteins, which were analyzed using DefineSecondary Structure of Proteins, resulting in 758 alpha helices (ALPHA.zip). ... |
| 2 | 4odj | - | http://geb.uni-giessen.de/geb/volltexte/2016/12297/ | Redox regulation of Plasmodium falciparum methionine adenosyltransferase and Mycetinis scorodonius DyP-type peroxidase 1 | 2016 | J Pretzel - 2016 - geb.uni-giessen.de | ... Since the crystal structure of PfalMAT is not yet available, we constructed a homology model based on the crystal structures of MAT from different organisms, the alpha subunit of human MAT isoform 2 (hMAT2A) (PDB ID 2p02) and C. hominis MAT (PDB ID 4odj) ... |
| 3 | 3uf8 | - | http://ico2s.org/data/papers/Lee2012c.pdf | An Approximated Voxel Approach for the Identification and Modelling of Ligand-Binding Sites | 2012 | LW Lee, A Bargiela - Journal of Physical Science and Application, 2012 - ico2s.org | ... selected. These proteins are given as [PDB: 1FKF, 1BKF, 1YAT, 3VAW, 3UF8, 1C9H]. ... (a) (b) Fig. 14 (a) Screenshot of FK506-bound protein 3UF8 from the RCSB PDB with ligand site shown, (b) screenshot of the identified site from the voxel-based approximated method. ... |
| 4 | 2khp | - | http://ideaexchange.uakron.edu/honors_research_projects/403/ | Effects of novel fragment-warhead adducts in situ and in vitro with glutaredoxin orthologs. | 2017 | AJ Caras - 2017 - ideaexchange.uakron.edu | ... Figure 1. Structure of RK088 ACP, an example of a fragment- warhead adduct. ... by pastmembers of Dr. Leeper's group.23 Figure 2. Solution structures of hGRX1 (PDB: 1JHB)29and BrmGRX (PDB: 2KHP)20, with the CPYC active-site motif magnified. ... |
| 5 | 4ncx | - | http://ieeexplore.ieee.org/abstract/document/8035078/ | Parallelization of large-scale Drug-Protein binding experiments | 2017 | A Makris, D Michail, I Varlamis- & Simulation (HPCS, 2017 - ieeexplore.ieee.org | ... pair of proteins 4M10 (the structure of Murine Cyclooxygenase-2 Complex with Isoxicam) and 3KQZ (the structure of a ... random motifs malaria motifs 4fm5 42 6cox 27 3kwb 7 4ncx 23 1cjb 25 1nnu 10 1d3z 3 1cmx ... correspond to protein chains, only the distinct PDB IDs were kept. ... |
| 6 | 3ej0 | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6252744 | Predicting protein-ligand binding site with differential evolution and support vector machine | 2012 | GY Wong, FHF Leung, SH Ling - 2012 International Joint Conference on Neural Networks (IJCNN), 2012 - ieeexplore.ieee.org | ... Predicted quaternary structures were used rather than the tertiary structures provided in Protein Data Bank (PDB) [2]. The attributes used in SVM are selected based on the properties of protein in four different areas: ... 1AHB 1BXQ 1M5R 2ZJA 3EJ0 1C1H 1DAK 1MKA 2ZU3 3F47 ... |
| 7 | 3lgj | 3pgz | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6558165 | Comparative modelling and in-silico drug designing | 2013 | D Kumar, A Sarvate, S Singh? - IEEE Conference on Information & Communication Technologies (ICT), 2013 - ieeexplore.ieee.org | ... Model No. Template PDB ID Percentage of residues in most favoured region of Ramachandran plot Z- score 1 1Z9F 91 -4.9 2 3TQY 93 -4.53 3 1SRU 90 -3.23 ... 8 3PGZ 88 -4.27 9 3ULL 92 -4.06 10 2DUD 95 -4.13 11 1SE8 94 -4.33 12 3LGJ 94 -5.34 13 5MDH 90 -1.48 ... |
| 8 | 3p0x | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6636315 | Predicting Protein-Ligand Binding Sites using Support Vector Machine with Protein Properties | 2013 | G Wong, F Leung, S Ling - 2013 - ieeexplore.ieee.org | ... The structure of proteins with bound ligands are obtained from the Protein Data Bank (PDB) [8], which ... First, the real binding sites are defined from PDB and each site is represented by a grid point in the center of it. ... They are 2cwh, 1g6c, 3p0x, 1wxg, 3kco, and 1k54. ... |
| 9 | 3ijp | - | http://ijib.classicrus.com/trns/81191318189978.pdf | Molecular cloning, biochemical and biophysical studies of Dihydrodipicolinate reductase of Pseudomonas aeruginosa PAO1 | 2011 | V Anand, A Gautam, D Sareen, TP Singh? - Int. J. Integ. Biol, 2011 - ijib.classicrus.com | ... Thermotoga maritima (Pearce et al., 2008) have been characterized both mechanistically and structurally while some preliminary crystallization reports have been published for Staphylococcus aureus (Dommaraju et al., 2010) and Bartonella henselae (PDB code 3IJP) as well. ... |
| 10 | 5woq | - | http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf | In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis | 2018 | YN Joshi, RD Salunkhe - ijiset.com | was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling |