We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8T1A | 2023 | 0 |
| 8T5J | 2023 | 0 |
| 8T5N | 2023 | 0 |
| 6BZB | 2018 | 0 |
| 8T5T | 2023 | 0 |
| 6C0D | 2018 | 0 |
| 8T7W | 2023 | 0 |
| 8T7Z | 2023 | 0 |
| 6C7C | 2018 | 0 |
| 6CJB | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6nb6 | - | https://www.annualreviews.org/doi/abs/10.1146/annurev-biophys-062920-063711 | Review of COVID-19 antibody therapies | 2021 | J Chen, K Gao, R Wang, DD Nguyen- Annual review of, 2021 - annualreviews.org | S230 SARS-CoV RBD IgG = 0.06 / BLI (73) 6NB6 (73) 4.30 Three-Dimensional Structure Alignment All of the available 3D structures of the SARS-CoV-2 S-protein RBD in complex with antibod- ies are aligned to ACE2 The PDB ID of these complexes can be found in Table 1 |
| 2 | 4dhe | 6n38 | https://www.annualreviews.org/doi/abs/10.1146/annurev-micro-020518-115420 | Assembly and subcellular localization of bacterial type VI secretion systems | 2019 | J Wang, M Brodmann, M Basler- Annual review of microbiology, 2019 - annualreviews.org | The TssM cytosolic domain is modeled after NTPase-like domain EngB ( PDB 4DHE ) followed by a helical extension modeled after DPY-30 f ) Structure of the PDB 3ZRJ) binding to the TssC positioned in the same orientation as in panel e. Abbreviation: PDB , PDB , Protein Data |
| 3 | 3d6b | 3ii9, 3i3r, 3kjr | https://www.annualreviews.org/doi/abs/10.1146/annurev.biophys.050708.133630 | Protein crystallization using microfluidic technologies based on valves, droplets, and SlipChip | 2010 | L Li, RF Ismagilov- Annual review of biophysics, 2010 - annualreviews.org | was compared with current state-of-the-art technologies at the Seattle Structural Genomics Center crystal structures were solved at higher resolutions higher than those for structures solved at at 1.73 (PDBid:3II9) compared to 2.2 at SSGCID (PDBid: 3D6B ), and dihydrofolate |
| 4 | 4qfh | - | https://www.arca.fiocruz.br/handle/icict/23073 | Integrao de diferentes abordagens para a avaliao de atividade antiparasitria, propriedades ADMET e alvos celulares de novas Arilimidamidas sobre | 2016 | CC Santos - 2016 - arca.fiocruz.br | OMS Organizao Mundial de Sade PAINS Do ingls Pan-assay Interference compounds PCR Reao em cadeia da polimerase PDB Do ingls Protein Data Bank pKa Constante de ionizao de cidos Pt Pentamidina SdpS Do ingls Spermidine synthase |
| 5 | 3uw1 | 3u7j, 4em8 | https://www.arca.fiocruz.br/handle/icict/24191 | Identificao in silico de potenciais inibidores da ribose 5-fosfato isomerase de Trypanosoma cruzi | 2017 | VVS Castilho - 2017 - arca.fiocruz.br | In this study, novel potential inhibitors were proposed for the Rpi of T. cruzi (TcRpi) based on a computer-aided approach, including structure -based and ligand-based pharmacophore modeling ativo da estrutura cristalogrfica TcRpiB ( PDB 3K7S) .... 70 |
| 6 | 4i1i | 4h7p | https://www.arca.fiocruz.br/handle/icict/34553 | Anlise de aspectos estruturais em imunoinformtica utilizando candidatos vacinais contra Leishmaniose que foram selecionados usando vacinologia reversa. | 2018 | JPL Velloso - 2018 - arca.fiocruz.br | Considering the importance of protein structure in immunological interactions and in vaccine infantum, protein modeling, molecular docking, structural protein disorder. Page 11. LISTA DE QUADROS NCBI - National Center for Biotechnology Information PDB - Protein Data Bank |
| 7 | 4g5d | 4h7p, 4h51 | https://www.benthamdirect.com/content/journals/cmc/10.2174/010929867332327124100... | Targeting Leishmaniasis with Nitrovinyl Derivatives: Synthesis, In Vitro Assessment, and Computational Exploration | 2025 | A Asadipour, FG Khani- Current Medicinal, 2025 - benthamdirect.com | was incorporated into the structures of -nitrostyrenes to conduct PDB files were employed throughout all procedures, each In the main pockets of both 1XTP and 4G5D , a - stacking |
| 8 | 6bfu | - | https://www.biorxiv.org/content/10.1101/2020.02.18.955195v1.abstract | Structure and immune recognition of the porcine epidemic diarrhea virus spike protein | 2020 | RN Kirchdoerfer, M Bhandari, O Martini, LM Sewall- bioRxiv, 2020 - biorxiv.org | from HuCoV-NL63 (5SZS. pdb (Walls et al., 2016b)), Porcine deltacoronavirus ( 6BFU . pdb , (Xiong et pdb , (Kirchdoerfer et al., 2018)) and Infectious bronchitis virus (6CV0. pdb , (Shang et the PEDV spike differs in several regards to the previously determined NL63 spike structure |
| 9 | 6bfu | 6nb4 | https://www.biorxiv.org/content/10.1101/2020.03.04.976258v1.abstract | Cryo-electron microscopy structure of the SADS-CoV spike glycoprotein provides insights into an evolution of unique coronavirus spike proteins | 2020 | S Ouyang- BioRxiv, 2020 - biorxiv.org | lower and outer side of S1-CTDs arranged as a big triangle. This architecture , 157 ie, CTD sandwiched by its own NTD and the adjacent NTD, comes into being 158 189 (G). Cryo-EM structure of SADS-CoV S monomeric subunit. The structural 190 |
| 10 | 6nb6 | - | https://www.biorxiv.org/content/10.1101/2020.04.03.024885v1.abstract | Rapid in silico design of antibodies targeting SARS-CoV-2 using machine learning and supercomputing | 2020 | T Desautels, A Zemla, E Lau, M Franco, D Faissol- BioRxiv, 2020 - biorxiv.org | In the absence of a known SARS-CoV-2 spike protein structure , we characterized the SARS-CoV- 2 surface glycoprotein sequence YP_009724390.1 [13 The structures of the spike proteins from SARS-CoV-1 (Protein Data Bank ( PDB ) entries: 5x58 [15], 6nb6 [10], 2dd8 [11 |