We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2LKY | 2011 | 5 |
| 2LOL | 2012 | 5 |
| 2LPD | 2012 | 1 |
| 2LWK | 2012 | 24 |
| 2LXF | 2012 | 2 |
| 2M0N | 2012 | 1 |
| 2M4Y | 2013 | 4 |
| 2MCQ | 2013 | 1 |
| 2MJ3 | 2014 | 3 |
| 2MRL | 2014 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2khr | 2kvc | http://search.proquest.com/openview/fc1652af707b4e47ebd729008cd8ea6d/1?pq-origsi... | Investigating conformational transitions of proteins by coarse-grained elastic network models | 2012 | M Tekpinar - 2012 - search.proquest.com | The model is the green tube representation and the target ( PDB ID: 1LST) is the dark blue tube. Residues 91 B- factors show that each atom in the structure is dynamic in side chains of their amino acids. However, some conformations can have large structural |
| 2 | 2klx | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.9b00101 | Utility of Covalent Labeling Mass Spectrometry Data in Protein Structure Prediction with Rosetta | 2019 | ML Aprahamian, S Lindert- Journal of Chemical Theory and, 2019 - ACS Publications | like the following: Which amino acid types provide the most useful structural information structures that served as a nonredundant representation of single chain monomers in the PDB the protein set, distributions of the total number of residues, secondary structure content... The six proteins selected from the ab initio set were PDB ID 1tpm, 2klx, 2nc2, 2y4q, 3iql, and... |
| 3 | 2klx | 3hhj, 3fq3 | https://www.sciencedirect.com/science/article/pii/S0888754319304598 | Potential druggable proteins and chimeric vaccine construct prioritization against Brucella melitensis from species core genome data | 2019 | M Aslam, M Shehroz, M Shah, MA Khan, SG Afridi- Genomics, 2019 - Elsevier | The radius of gyration was also predicted to assess the compactness of structure and the Gene symbols, PDB homolog ID's, Protein Names, Model C-score, Template Vs model RMSD BME_RS00875, 2KLX , glutaredoxin 3, 0.89, 2.0 1.6 , 98.718, 2.88, 0.99 (26), 9419.75, 3.27 |
| 4 | 2klx | - | http://rave.ohiolink.edu/etdc/view?acc_num=osu1554977217363556 | Studies in Computational Biochemistry: Applications to Computer Aided Drug Discovery and Protein Tertiary Structure Prediction | 2019 | ML Aprahamian - 2019 - rave.ohiolink.edu | structures were identified using a receiver operator characteristic (ROC) analysis and a set of known binding compounds. Using these structures as the receptors for structure -based drug discovery, a virtual screen was performed on the National Cancer Institute's ... The six proteins selected from the ab initio set were PDB ID 1tpm, 2klx, 2nc2, 2y4q, 3iql, and 4omo. |
| 5 | 2kn9 | - | https://www.frontiersin.org/articles/10.3389/fpls.2018.01333/abstract | A two-headed monster to avert disaster: HBS1/SKI7 is alternatively spliced to build eukaryotic RNA surveillance complexes | 2018 | JO Brunkard, B Baker- Frontiers in plant science, 2018 - frontiersin.org | Recently, structural studies of the cytoplasmic RNA exosome in yeast and humans have revealed the crucial importance of SKI7 in bridging ... The N-terminus of SKI7 (through the patch 4-like motif) structure was modeled by Phyre24, which used structures of YY1-associated factor 2 (PDB 2D9G), HBV-associated factor (PDB 2CRC), Rubredoxin B (PDB 2KN9), NEMO CoZi (PDB 4OWF), and TAB3-NZF (PDB 3A9K). |
| 6 | 2kn9 | - | https://www.biorxiv.org/content/10.1101/2020.10.27.356691v1.abstract | A new twist of rubredoxin function in M. tuberculosis | 2020 | T Sushko, A Kavaleuski, I Grabovec, A Kavaleuskaya- bioRxiv, 2020 - biorxiv.org | 21]. Previously, a zinc-substituted RubB structure was solved by NMR ( PDB ID: 2KN9 ). Pairwise . In the NMR model, residues at C and N termini show backbone variability, while the rest of the structure remain almost unperturbed |
| 7 | 2kn9 | - | http://www2.ic.uff.br/PosGraduacao/Dissertacoes/477.pdf | Metodos Computacionais para o Calculo de Estruturas de Proteinas: Aproximando o Problema Molecular de Geometria de Distancias de Dados de Ressonancia Magnetica Nuclear | 2010 | PC Nucci - ic.uff.br | ... PMGD Problema Molecular de Geometria de Dist?ncias PMGDD Problema Molecular de Geometria de Dist?ncias Discreto BP Branch-And-Prune RMN Resson?ncia Magn?tica NuclearPDB Protein Data Bank pH Potencial Hidrogeni?nico 12 Page 14. Cap??tulo 1 Introdu??ao ... |
| 8 | 2kn9 | - | https://www.ijper.org/sites/default/files/IndJPhaEdRes_53_2s-143.pdf | Structure Based Computational Exploration of Beilschmiedia Compounds with Selected Targets against Multidrug-Resistant Mycobacterium tuberculosis | 2019 | M Yasir, P Singh, S Chohan, R Shrivastava- INDIAN JOURNAL OF, 2019 - ijper.org | Protein Name PDB - ID Binding Energy (kcal/mol) Antigen 85C 1dqz -3.34 Cytochrome P450 Crystal structure of 3-bromopyruvate modified isocitrate lyase (icl) 1f8m -2.09 EmbR 2ff4 -4.38 Hydroxymycolate synthase MmaA4 2fk7 - Zinc-substituted rubredoxin B 2kn9 -3.46 Cell |
| 9 | 2kn9 | - | https://www.sciencedirect.com/science/article/pii/S0010854517303119 | Rubredoxins derivatives: Simple sulphur-rich coordination metal sites and its relevance for biology and chemistry | 2017 | BK Maiti, RM Almeida, I Moura, JJG Moura- Coordination Chemistry, 2017 - Elsevier | Rubredoxins (Rds) and their derivatives have been extensively used, in the last few decades, in order to elucidate structure and functional aspects of metal sit. |
| 10 | 2kn9 | - | http://journal.iisc.ernet.in/index.php/iisc/article/view/4461 | Redox Proteins of Mycobacterium tuberculosis | 2014 | S Phulera, M Akif, AA Sardesai? - Journal of the Indian Institute of Science, 2014 - journal.iisc.ernet.in | ... The individual structures shown are (A) NrdH, pdb id: 4HS1, (B) FurB, pdb id: 2O03, (C) DipZ,pdb id: 2HYX, (D) FcoT, pdb id: 2PFC, (E) AhpD, pdb id: 1KNC, (F) Mycoredoxin, pdb id: 2LQQ, (G) Rubedoxin C with Zinc atom shown as sphere, pdb id: 2KN9, (H) TrxC, pdb id: 1LU4 ... |