We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3FVB | 2009 | 10 |
| 3G87 | 2009 | 1 |
| 3GAF | 2009 | 9 |
| 3GBZ | 2009 | 3 |
| 3GC0 | 2009 | 4 |
| 3GE4 | 2009 | 4 |
| 3GK0 | 2009 | 2 |
| 3GK3 | 2009 | 1 |
| 3GKA | 2009 | 10 |
| 3GLQ | 2009 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2n6g | 2lpd, 2myy | http://www.jbc.org/content/early/2016/09/05/jbc.M116.746297.short | Structures of a nonribosomal peptide synthetase module bound to MbtH-like proteins support a highly dynamic domain architecture | 2016 | BR Miller, EJ Drake, C Shi, CC Aldrich- Journal of Biological, 2016 - ASBMB | The crystal structure of an MLP from Pseudomonas aeruginosa called PA2412 (13), and the from M. tuberculosis (14) and three other organisms [M. marinum (2MYY), M. avium ( 2N6G ), and Burkholderia 2LPD)] that have not been published, all show a flat architecture with three |
| 2 | 2n6t | 2n6w, 2n6x, 2n6s | https://www.sciencedirect.com/science/article/pii/S0022283617304680 | F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly | 2017 | S Jain, T Schlick- Journal of molecular biology, 2017 - Elsevier | Table 1. List of 50 RNA PDB files whose 3D structures were generated in this paper. PDB , Residues, Molecule, Structure . 2M4W, 17, HEV genome bulge, Hairpin, internal loop 2N6T , 42, CssA mRNA thermometer top, Hairpin, internal loops |
| 3 | 2n6t | 2n6x, 2n6w, 2n6s | https://www.biorxiv.org/content/10.1101/554931v1.abstract | Conditional Prediction of RNA Secondary Structure Using NMR Chemical Shifts | 2019 | K Zhang, AT Frank- bioRxiv, 2019 - biorxiv.org | chemical shifts were downloaded from the Protein Data Bank ( PDB : http://www. pdb .org) and native NMR-derived structure and the comparison structure is the CS-Folding generated structure 2JYM 2L5Z 2LK3 2MIS 2QH2 1Z2J 1JO7 5UZT 2N3Q 5IEM 2L3E 2N6T 2LPS 2N6S |
| 4 | 2n6x | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511288/ | RNA structure refinement using NMR solvent accessibility data | 2017 | C Hartlmller, JC Gnther, AC Wolter, J Whnert - Scientific , 2017 - ncbi.nlm.nih.gov | ... Figure 4b ) and the corresponding sPRE values are underestimated based on the NMR solution structure , independent of which structural model of the UUCG loop motif ( PDB codes 1HLX, 1K2G, 1TLR, 1Z31, 2KHY, 2KOC, 2KZL, 2LHP, 2LUB and 2N6X ) was used. ... |
| 5 | 3cez | 3cxk, 3eoo | http://www.jbc.org/content/285/43/33315.short | Insights into function, catalytic mechanism, and fold evolution of selenoprotein methionine sulfoxide reductase B1 through structural analysis | 2010 | FL Aachmann, LS Sal, HY Kim, SM Marino? - Journal of Biological Chemistry, 2010 - ASBMB | ... Relative to MsrB1, the crystal structures of MsrBs from N. gonorhoeae (PDB code 1L1D) (8), X. campestris (PDB code 3HCI) (36), B. pseudomallei (PDB code 3CEZ/3CXK), S. pneumoniae (PDB code 3E0M) (31), and B. subtilis (3E0O) (31), as well as the solution structure of B ... |
| 6 | 3cez | - | https://www.sciencedirect.com/science/article/pii/S0891584920311321 | On the functionality of a methionine sulfoxide reductase B from Trypanosoma cruzi | 2020 | DG Arias, MS Cabeza, ML Echarren- Free Radical Biology, 2020 - Elsevier | These enzymes can reduce specifically one or another of the isomers of MetSO (free and protein-bound). This redox modification could change the structure and function of many proteins, either concerned in redox or other metabolic pathways ... Models were based on the resolved structure of MSRB from Methanothermobacter thermautotrophicus (PDB 2K8D), Burkholderia pseudomallei (PDB 3CEZ), and Xanthomonas campestris (PDB 3HCI). |
| 7 | 3cez | - | http://scholar.google.com/https://etd.ohiolink.edu/!etd.send_file?accession=wrig... | Understanding the Molecular Dynamics of YPEL3 and FHIT Gene Expression | 2010 | KD KELLEY - 2010 - etd.ohiolink.edu | ... protein structure may also aid in understanding the molecular events involved in theinduction and maintenance of premature senescence. Identifying structural homologybetween a predicted model of YPEL3 and other known structures may ... |
| 8 | 3cez | 3cxk | http://link.springer.com/chapter/10.1007/978-94-017-8742-0_11 | Evolution of Structural and Coordination Features Within the Methionine Sulfoxide Reductase B Family | 2014 | E Shumilina, O Dobrovolska, A Dikiy - The Structural Basis of Biological , 2014 - Springer | Figure V.2.2. Three-dimensional structure of Zn-binding site and thecorresponding regions of MsrBs family. For the explanation see text. A - MsrB1, M.musculus, 2KV1, [123]; B - MsrB1, H. sapience , 3MAO, not published; C - MsrB2, M.musculus, 2L1U, [125]; D - MsrB, X. campestris, 3HCI, [124]; E -B. pseudomallei,3CEZ/3CXK, not published; http://www.diva-portal.org/smash/get/diva2:603697/FULLTEXT02.pdf |
| 9 | 3cez | 3cxk | http://www.sciencedirect.com/science/article/pii/S002228360901095X | Methionine sulfoxide reductase B displays a high level of flexibility | 2009 | FM Ranaivoson, F Neiers, B Kauffmann? - Journal of molecular Biology, 2009 - Elsevier | ... View thumbnail images View high quality image (983K). Two X-ray structures of MsrB from Neisseria gonorrhoeae [Protein Data Bank (PDB) ID 1L1D 12 ] and Burkhodelia pseudomallei (PDB IDs 3CXK and 3CEZ; unpublished results) have been determined so far. ... |
| 10 | 3cez | - | http://ntnu.diva-portal.org/smash/record.jsf?pid=diva2:603697 | Structure-functional Characterization of Mammalian Redox Proteins: Methionine sulfoxide reductase B1 (MsrB1), Glutaredoxin domain (Grx) of TGR, and Thioredoxin (Trx) | 2013 | O Dobrovolska - 2013 - ntnu.diva-portal.org | ... situated in the second ?-sheet. The four cysteines Cys23, Cys26, Cys71, and Cys74, situated outside the protein active site, coordinate zinc ion, stabilizing the structure of MsrB1. Figure II.1.2. Structure of MsrB1 (pdb code 2kv1) [55]. II.1.1 MsrB1-Thioredoxin interaction ... |