We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6Q10 | 2019 | 0 |
| 6Q1Y | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 6DM6 | 2019 | 0 |
| 5DWM | 2015 | 0 |
| 6DLY | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hhj | - | http://www.jbc.org/content/285/1/444.short | Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base | 2010 | T Nakamura, S Meshitsuka, S Kitagawa, N Abe? - Journal of Biological Chemistry, 2010 - ASBMB | ... ?, Z = 19.0) and with dGTP (BdRppH-dGTP, 3EF5, rmsd = 1.9 ?, Z = 18.3) (40) and unknown proteins from Bartonella henselae (3HHJ, rmsd = 1.8 ... ray and NMR structures in the ligand-free form and 3.5 ?for 127 C? atoms between structures in the complex form (PDB IDs: 1MUT ... |
| 2 | 5cy4 | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2019.1643786 | Structural and dynamic studies provide insights into specificity and allosteric regulation of ribonuclease as, a key enzyme in mycobacterial virulence | 2019 | L Calvanese, F Squeglia, M Romano- Structure and, 2019 - Taylor & Francis | Despite this, its structure , a dimeric molecule with each monomer adopting a compact entry 4OKE) from Mycobacterium tuberculosis against the Protein Data Bank ( PDB ) using the Coxiella burnetii (Coxbu) (3TR8, Z-score 13.8), Acinetobacter baumannii (Aciba) ( 5CY4 , Z-score |
| 3 | 3dmo | - | http://www.sciencedirect.com/science/article/pii/S1047847709003463 | Structural and functional analyses of< i> Mycobacterium tuberculosis Rv3315c</i>-encoded metal-dependent homotetrameric cytidine deaminase | 2010 | ZA S?nchez-Quitian, CZ Schneider, RG Ducati? - Journal of structural Biology, 2010 - Elsevier | ... in the PDB (3IJF). Fig. 7A and B show two views of the canonical homotetrameric structure observed for CDAs from S. cerevisiae (1R5T), B. subtilis (1UX1, 1UWZ, 1UX0, 1JTK), Mus musculus (1ZAB, 2FR5, 2FR6), Bacillus anthracis (2D30), Burkholderia pseudomallei (3DMO), ... |
| 4 | 4pfz | 3rr6, 3qdf | https://www.sciencedirect.com/science/article/pii/S0006291X18328705 | Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum | 2019 | W Yoo, CW Lee, B Kim, LTHL Le, SH Park- Biochemical and, 2019 - Elsevier | overall monomer structure , a schematic diagram of the connectivity, and the residue numbering of each secondary structure are shown in ID:3RR6, Z score: 34.6), a 5-carboxymethyl-2- hydroxymuconate delta-isomerase from Mycobacterium smegmatis ( PDB ID: 4PFZ ; Z score |
| 5 | 4o6r | - | http://scripts.iucr.org/cgi-bin/paper?s1399004715004228 | Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus | 2015 | AS Halavaty, RL Rich, C Chen, JC Joo… - … Section D: Biological …, 2015 - scripts.iucr.org | ... DALI (Holm & Rosenstro¨ m, 2010) analysis found a putative ALDH from Burkholderia cenocepacia (PDB entry 4o6r; Seattle Structural Genomics Center for Infectious Disease, unpublished work) to be the closest structural homolog of SaBADH (Z-score of 59.6; r.m.s.d. of 1.3 A ° ; 38% sequence homology)... |
| 6 | 5dd7 | - | https://repository.up.ac.za/handle/2263/63284 | Structural and functional analysis of thiaminephosphate and homoserine kinases from Mycobacterium tuberculosis | 2016 | CM Ntui - 2016 - repository.up.ac.za | Figure 3.17 X-ray diffraction pattern obtained from ThiL crystal Figure 3.18 The overall structure of MtbThiL Figure 3.20 Crystals obtained from optimization with ThrB Figure 4.1 Structural topology of MtbThiL with other ThiL structures PDB Protein Data Base pI Isoelectric point |
| 7 | 2mj3 | - | https://www.duo.uio.no/handle/10852/45840 | Structural and functional characterisation of ferredoxins in Bacillus cereus | 2015 | S Monka - 2015 - duo.uio.no | ...as well as testing out models generated from several homologous PDB-structures. This server generated models from 10 PDB files (1I7H, 3AH7, 3ZYY, 1KRH, 3N9Z, 2MJ3, 3HUI, 2Y5C, 1JQ4, 2WLB15) and generated two models from each by using two different programs SCULPTURE and MOLREP. ... |
| 8 | 3iml | - | http://www.biomedcentral.com/1472-6807/13/22/ | Structural and functional characterisation of the methionine adenosyltransferase from Thermococcus kodakarensis | 2013 | J Schlesier, J Siegrist, S Gerhardt, A Erb? - BMC Structural Biology, 2013 - biomedcentral.com | ... for archaeal MATs. The only exception from this observation is the structure of the Burkholderia pseudomallei MAT (PDB-ID 3IML), with a less pronounced torsion of only 35?. Figure 7 Spatial arrangement of MAT monomers. ... |
| 9 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 10 | 5umh | 5vxt | https://www.sciencedirect.com/science/article/pii/S0965174818303643 | Structural and functional characterization of an intradiol ring-cleavage dioxygenase from the polyphagous spider mite herbivore Tetranychus urticae Koch | 2018 | CR Schlachter, L Daneshian, J Amaya- Insect biochemistry and, 2018 - Elsevier | Here, we have determined the spectroscopic, structural and metabolic properties of TuIDRCD, the first arthropod ID-RCD used for determination, refinement, and validation of mTuIDRCD structure ; however, in this case the structure of mbp-(t48)TuIDRCD ( PDB code: 5VG2 |