We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CXM | 2018 | 0 |
| 6CY5 | 2018 | 0 |
| 6EEP | 2018 | 0 |
| 6EFW | 2018 | 0 |
| 6EFX | 2018 | 0 |
| 6MDY | 2018 | 0 |
| 6MFU | 2018 | 0 |
| 6MJK | 2018 | 0 |
| 5SCT | 2022 | 0 |
| 3UK2 | 2011 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qxz | 3oc7, 4qtp, 3swx, 3qk8, 3qre | https://www.sciencedirect.com/science/article/pii/S1476927117300105 | Similarity/dissimilarity analysis of protein structures based on Markov random fields | 2018 | J Wu, T Zhou, J Tao, Y Hai, F Ye, X Liu, Q Dai- Computational biology and, 2018 - Elsevier | Recently, the growth of the Protein Data Bank ( PDB ) (Berman et al., 2000) has been accelerated by a large scale As a result, fast and efficient algorithms for protein structure comparison have become more important to take advantage of the huge amount of structural data |
| 2 | 4l82 | - | https://www.sciencedirect.com/science/article/pii/S2405844019358530 | Simulation-based protein engineering of R. erythropolis FMN oxidoreductase (DszD) | 2019 | R Fallahzadeh, B Bambai, K Esfahani, AA Sepahi- Heliyon, 2019 - Elsevier | their PDB information, the multiple alignments of these 22 PDB files was done with the DszD. pdb (Fig 1. Predicted three dimensional structure for wild-type DszD enzyme residues (Asn or Ile residue instead of Ala79) were presented on the 3K88 and 4L82 homologous proteins |
| 3 | 3oks | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13293/full | Single active‐site mutants are sufficient to enhance serine: pyruvate α‐transaminase activity in an ω‐transaminase | 2015 | D Deszcz, P Affaticati, N Ladkau, A Gegel… - FEBS …, 2015 - Wiley Online Library | ... More distantly related ω-TAms identified in the structure alignments, such as ornithine-AT (PDBcode: 1OAT), 4-aminobutyrate-AT (PDB code: 3OKS and 1SFF), acetylornithine-AT (PDB code:2ORD), l-lysine-epsilon-AT (PDB code: 2CJG), β-phenylalanine-AT (PDB code ... |
| 4 | 3ecd | - | http://mcb.asm.org/content/28/14/4507.short | Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3 | 2008 | CT Ranjith-Kumar, KE Duffy, JL Jordan? - Molecular and cellular biology, 2008 - Am Soc Microbiol | ... (C) The locations of peptides P1 and P2 within the three-dimensional model of 3ECD (PDB accession number, 1ZIW). The peptide spanning residues 211 to 222 is in green, and the one spanning residues 560 to 583 is in yellow. ... |
| 5 | 3o2e | - | https://portlandpress.com/bioscirep/article-abstract/doi/10.1042/BSR20202956/226... | Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines | 2020 | T Roret, G Alloing, JM Girardet, T Perrot- Bioscience, 2020 - portlandpress.com | protein structures found in the protein databank, we tentatively attributed the changes to the Interestingly, a structure of a BolA_H from the pathogen Coxiella burnetii ligating a Co atom was solved in the frame of a structural genomic initiative for drug design, deposited in ...The coordinates of A. thaliana, B. bovis, and C. burnetii BolA proteins are from previous crystal structures (PDB entries 4PUG, 4PUH, 4PUI, 3O2E and 3TR3) |
| 6 | 3pfd | - | https://www.sciencedirect.com/science/article/pii/S0141022918305313 | Site-directed mutation to improve the enzymatic activity of 5-carboxy-2-pentenoyl-CoA reductase for enhancing adipic acid biosynthesis | 2019 | J Yang, Y Lu, Y Zhao, Z Bai, Z Ma, Y Deng- Enzyme and Microbial, 2019 - Elsevier | 3PFD was the PDB ID of the template. Therefore, we used 3PFD as the template to build the homology model of Tfu_1647 protein using DS 2017R2 [17] We then used the Deriding-like force field in DS 2017R2 to optimize the structure to ensure that we produced a |
| 7 | 3v2i | - | http://www.mdpi.com/2079-6382/5/2/16/htm | Small Molecule Docking Supports Broad and Narrow Spectrum Potential for the Inhibition of the Novel Antibiotic Target Bacterial Pth1 | 2016 | PP Ferguson, WB Holloway, WN Setzer, H McFeeters - Antibiotics, 2016 - mdpi.com | ... were obtained from the Protein Data Bank and each structure was analyzed for ... The Pth1 setincluded eight bacterial structures: Escherichia coli (PDB 2PTH) [11 ... aeruginosa (4FYJ) [14],Francisella tularensis (3NEA) [15], Burkholderia thailandensis (3V2I) [31], Acinetobacter ... |
| 8 | 5upg | 6cax | https://www.sciencedirect.com/science/article/pii/S0223523423002921 | Small molecule LpxC inhibitors against gram-negative bacteria: Advances and future perspectives | 2023 | Z Niu, P Lei, Y Wang, J Wang, J Yang- European Journal of, 2023 - Elsevier | -diphosphate ( PDB code: 2IER); (C) Crystal structure of the E. coli LpxC/LPC-009 complex ( PDB code: 3P3G); (D) Co-crystal structure of LpxC-3 aeruginosa LpxC ( PDB code: 3UHM). |
| 9 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 10 | 2lwk | - | http://onlinelibrary.wiley.com/doi/10.1002/wrna.1373/full | Small molecules targeting viral RNA | 2016 | T Hermann - Wiley Interdisciplinary Reviews: RNA, 2016 - Wiley Online Library | ... The added tetraloop is indicated in gray. (c) Detail view of the ligand binding site in theNMR model, showing hydrogen atoms of the ligand 11. Structure images were preparedfrom PDB coordinate file 2LWK.[48]. Download figure to PowerPoint. ... |