We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6N0U | 2018 | 0 |
| 6N0W | 2018 | 0 |
| 6N1M | 2018 | 0 |
| 6NB0 | 2018 | 0 |
| 6NB2 | 2019 | 0 |
| 3TZU | 2011 | 0 |
| 6NBM | 2019 | 0 |
| 6NDR | 2018 | 0 |
| 6NHI | 2019 | 0 |
| 6NRZ | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5woq | - | https://www.nature.com/articles/s41586-023-06376-y | Small protein modules dictate prophage fates during polylysogeny | 2023 | JE Silpe, OP Duddy, GE Johnson, GA Beggs- Nature, 2023 - nature.com | Structural predictions and homologues predicted by the DALI server were aligned and... (b) Structural alignment of TF72 (brown) and TF63 (blue) as monomers with the highest scoring homologs: C.AhdI (green), C.BcII (orange), C.Esp1396I (pink), and ClgR (gray) (PDB ID: 1Y7Y, 2B5A, 3G5G, and 5WOQ, respectively). |
| 2 | 5u29 | - | https://repositorio.ufpb.br/jspui/handle/123456789/15841 | Sntese, elucidao estrutural e estudos in silico de novos compostos 2-amino-tiofnicos imdicos candidatos a frmacos antifngicos, antileishmanicida e | 2019 | ALC Pereira - 2019 - repositorio.ufpb.br | Synthesis, structural elucidation and in silico studies of novel 2-amino- thiopheneic compounds imidic hybrids were synthesized with determined physicochemical characteristics and confirmed structures through 1H CYP51A1 ( PDB id: 1EA1); (B): ESBT-06 e FTAs ( PDB id: 3SFX |
| 3 | 3qhx | - | https://www.biorxiv.org/content/10.1101/651067v1.abstract | SolXplain: An Explainable Sequence-Based Protein Solubility Predictor | 2019 | R Mall- bioRxiv, 2019 - biorxiv.org | be used as a scoring function to measure the quality of a tree structure Ht at in [13], devise a fast, greedy and iterative algorithm to identify these optimal tree structures We train our XGBoost classifier on top of physio-chemical (global), sequence and structural features extracted |
| 4 | 2n3s | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.3042/full | Solution structure of protein synthesis initiation factor 1 from Pseudomonas aeruginosa | 2016 | Y Hu, A Bernal, JM Bullard, Y Zhang - Protein Science, 2016 - Wiley Online Library | ... from: E. coli (PDB 1AH9), M. tuberculosis (PDB 3I4O), S. pneumoniae (PDB 4QL5), B.thailandensis (PDB 2N3S), T. thermophilus (PDB 1HR0). Secondary structural elements,highlighted in gray, were derived from the PDB structures. The secondary structure elements ... |
| 5 | 5u4s | - | https://www.sciencedirect.com/science/article/pii/S0041008X20305093 | Species-specific differences in the inhibition of 11-hydroxysteroid dehydrogenase 2 by itraconazole and posaconazole | 2020 | SG Inderbinen, M Zogg, M Kley, M Smieko- Toxicology and Applied, 2020 - Elsevier | models were based on the template structure of 11-HSD1 (various PDB IDs), one model on the template structure of 3-oxoacyl-[acyl-carrier-protein] reductase ( PDB ID: 3u9l) and finally one on the template structure of a putative short chain dehydrogenase ( PDB ID: 5u4s ) |
| 6 | 6q04 | - | https://www.sciencedirect.com/science/article/pii/S1047847721000186 | Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity | 2021 | D Pal- Journal of Structural Biology, 2021 - Elsevier | The structural and dynamics analyses of the Spike show that its fusion loop spatially organizes three fusion peptides contiguous to each other to synergistically I propose a Contact Initiation Model based on the architecture of the Spike quaternary structure that explains the |
| 7 | 3krs | - | http://www.sciencedirect.com/science/article/pii/S1093326310001981 | Stability tests on known and misfolded structures with discrete and all atom molecular dynamics simulations | 2011 | S Yun, HR Guy - Journal of Molecular Graphics and Modelling, 2011 - Elsevier | ... patterns and high resolution (less than 2.0 ? resolution) were selected for this study: a human serum retinol-binding protein (RBP with PDB ID 1JYD) [24], a regulator of G-protein signaling (RGS4 with PDB ID 1EZT) [25], and triosephosphate isomerase (TIM with PDB ID 3KRS). ... |
| 8 | 6bfu | - | https://www.nature.com/articles/s41598-018-34171-7 | Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis | 2018 | RN Kirchdoerfer, N Wang, J Pallesen, D Wrapp- Scientific reports, 2018 - nature.com | Structural description of SARS-CoV S 2P ectodomain Structure of the SARS-CoV S 2P ectotodomain fusion peptide 24 adopts a conformation distinct from equivalent regions in (b) alpha- (HuCoV-NL63, 5SZS. pdb 20 ) and (c) deltacoronavirus spikes (PDCV S, 6BFU . pdb 21 ) as |
| 9 | 2khp | - | http://jb.asm.org/content/192/19/4963.short | Staphylococcus aureus NrdH redoxin is a reductant of the class Ib ribonucleotide reductase | 2010 | I Rabinovitch, M Yanku, A Yeheskel? - Journal of Bacteriology, 2010 - Am Soc Microbiol | ... The C. ammoniagenes NrdH X-ray structure (PDB accession number 1R7H) (39) was the best result, followed by the Brucella melitensis glutaredoxin nuclear magnetic resonance (NMR) structure (PDB accession number 2KHP) and the E. coli NrdH X-ray structure (PDB ... |
| 10 | 4odj | 4ig6, 4kgn, 4h3z | https://iris.sissa.it/handle/20.500.11767/59211 | Static and dynamic properties of knotted biopolymers: from bulk to nanochannels and nanopores | 2017 | A Suma - 2017 - iris.sissa.it | ... Several pioneering experiments and structural surveys demonstrated that knots can appear in biopolymers such as RNA [7], proteins [8 ... PDB download (~105 protein chains) ... We have used the same cutoff distance to check if some structure , such as the cyclotide, had a cyclized ... |