We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6XK2 | 2020 | 0 |
| 6XNQ | 2020 | 0 |
| 6XR5 | 2020 | 0 |
| 5F9Y | 2016 | 0 |
| 7JFN | 2020 | 0 |
| 5I92 | 2016 | 0 |
| 4XFK | 2015 | 0 |
| 3O0K | 2010 | 0 |
| 6D46 | 2018 | 0 |
| 4XGH | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4n5f | - | http://www.jbc.org/content/293/5/1702.short | Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family | 2018 | T Schwander, R McLean, J Zarzycki, TJ Erb- Journal of Biological, 2018 - ASBMB | The structure was solved using molecular replacement using the Phaser-MR and AutoBuild programs of the Phenix software package (31). The structure of a putative acyl-CoA dehydrogenase (PDB code 4N5F; 26.5% sequence identity) served as a search model for the molecular replacement. |
| 2 | 3uam | - | http://www.sciencedirect.com/science/article/pii/S0969212612001426 | Structural Basis for Substrate Targeting and Catalysis by Fungal Polysaccharide Monooxygenases | 2012 | X Li, WT Beeson, CM Phillips, MA Marletta, JHD Cate - Structure, 2012 - Elsevier | ... database (Protein Data Bank [PDB]) contains crystal structures of three CBM33 members, including S. marcescens CBP21 (PDB entry 2BEM) (Vaaje-Kolstad et al., 2005) and two other CBM33s (from Burkholderia pseudomallei and Vibrio cholera, PDB entries 3UAM and 2XWX ... |
| 3 | 4k73 | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.8b00244 | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 (LdtMt3) from Mycobacterium tuberculosis | 2019 | GA Libreros-Ziga, C dos Santos Silva- ACS Infectious, 2019 - ACS Publications | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 These structures revealed a fold and catalytic diad similar to those of other Ldts Mt The Ldt Mt3 faropenem structure indicated that faropenem is degraded after Cys-246 acylation The phases were obtained by molecular replacement with Phaser53 from CCP4 suite,54 adopting the PDB entries 4K73 and 5DU727 as models for LdtMt3 and LdtMt5 structures, respectively |
| 4 | 4h51 | - | http://www.sciencedirect.com/science/article/pii/S0166685115300311 | Structural basis for the relaxed substrate selectivity of Leishmania mexicana broad specificity aminotransferase | 2015 | J Wen, C Nowicki, W Blankenfeldt - Molecular and biochemical , 2015 - Elsevier | ... The most similar structure, however, is that of a putative aspartate aminotransferasefrom Leishmania major Friedlin (LmajASAT, PDB entry 4H51 [16]), which was notavailable when we first determined the structure of LmexBSAT. ... |
| 5 | 4ex5 | - | http://dx.plos.org/10.1371/journal.pone.0096198 | Structural Basis for the Site-Specific Incorporation of Lysine Derivatives into Proteins | 2014 | V Flgel, M Vrabel, S Schneider - PloS one, 2014 - dx.plos.org | ... A structure of the LysRS from Bacillus stearothermophilus (PDB code 3A74), Bulkholderia thailandensis (PDB code 4EX5 [38]) and Escherichia coli (PDB ... Atomic coordinates were submitted to the Protein Data Bank (http://www.ebi.ac.uk/pdbe/) with the PDB codes: 4CH6 ... |
| 6 | 5j3b | - | https://www.sciencedirect.com/science/article/pii/S0969212620303737 | Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System | 2020 | MB Bertelsen, M Senissar, MH Nielsen, F Bisiak- Structure, 2020 - Elsevier | Here, we provide structural insights into the architecture of the intact VapXD TA complex and toxin residues missing in each chain likely due to flexibility (Figure S1A). The structure consists of PDB Entry, VapXD (Selenomethionine) 6ZN8, VapD (Wild Type) 6ZI0, VapD (D7N) 6ZI1... (B) Structure of the Acinetobacter baumannii EF-P OB fold with conserved secondary structure in gold (PDB: 5J3B, left) and corresponding topology (right). |
| 7 | 4jcp | - | https://www.nature.com/articles/s41598-018-23821-5 | Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis | 2018 | T Martin, YC Lou, CC Chou, SY Wei, S Sadotra- Scientific reports, 2018 - nature.com | S1). Like Caenorhabditis elegans Cyp3 (Ccyp3; PDB : 1DYW) and Brugia malayi CypB (BcypB; PDB : 4JCP ), TvCyP1 is a divergent loop cyclophilin and possesses an additional loop in the a) Structure of TvCyP1 dimer showing secondary structural elements ( PDB : 5YB9 |
| 8 | 6nb7 | 6nb8, 6wps, 6wpt, 6ws6 | https://www.sciencedirect.com/science/article/pii/S1471490620302118 | Structural basis of SARS-CoV-2 and SARS-CoVantibody interactions | 2020 | E Gavor, YK Choong, SY Er, H Sivaraman- Trends in, 2020 - Elsevier | While the binding of COV21 to the S-glycoprotein resembles the binding of the SARS-CoV S230( PDB : 6NB7 )[73], the binding interface SARS-CoV-2-S-S309-Fab[12] complex ( PDB : 6WPS/6WPT/6WS6) and the crystal structure of SARS |
| 9 | 5cy4 | - | https://www.nature.com/articles/s41598-019-39641-0 | Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H | 2019 | CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com | Structure alignment search using DALI server showed that CpsORN exhibited high structural similarity with ORN HinORN; PDB code 1J9A), and Acinetobacter baumannii (AbaORN; PDB code 5CY4 ), and XC847 from Xanthomonas campestris (XcaORN; PDB code 2GBZ |
| 10 | 6wgy | 3hwk | https://www.sciencedirect.com/science/article/pii/S0141813021009077 | Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554 | 2021 | SH Park, CW Lee, DW Bae, H Do, CS Jeong- International Journal of, 2021 - Elsevier | of citrate-bound HyCS (closed conformation) and apo-EcCS (open conformation, PDB code: 4G6B residues showed a face-to-edge interaction in the open state structure of EcCS citrate binding-induced conformational changes result in the transfer of further structural changes to ... Mycobacterium tuberculosis (PDB code 3HWK), has a Lys residue at the position corresponding to Trp262 of HyCS but that from the Mycobacterium tuberculosis variant bovis AF2122/97 (PDB code 6WGY) contains a Ser residue instead |