Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
7TY0	2022	0
7TXZ	2022	0

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	4lgv	-	https://www.sciencedirect.com/science/article/pii/S0006291X21003016	Structural basis for substrate recognition of glucose-6-phosphate dehydrogenase from Kluyveromyces lactis	2021	HH Vu, C Jin, JH Chang- Biochemical and Biophysical Research, 2021 - Elsevier	The overall structure of Kluyveromyces lactis G6PD (cyan), Homo sapiens G6PD ( PDB code, 2BHL; red), Trypanosoma cruzi code, 6D23; yellow), Leuconostoc mesenteroides G6PD ( PDB code, 1DPG; purple), and Mycobacterium avium G6PD ( PDB code, 4LGV ; green)
2	3ol3	-	https://www.csbj.org/cms/10.1016/j.csbj.2020.11.051/attachment/ff440127-372b-492...	Supporting Information 2D Zernike polynomial expansion: finding the protein-protein binding regions	2021	E Milanettia, M Miottoa, L Di Rienzob, M Montic - csbj.org	comparison of protein regions that belong to different proteins, because they 35 remove the preliminary requirement of structural alignment. Moreover, the orthogonality of the
3	6nb3	-	https://advances.sciencemag.org/content/7/1/eabe5575.abstract	Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM	2021	C Xu, Y Wang, C Liu, C Zhang, W Han- Science, 2021 - advances.sciencemag.org	For the FP region, we first built the homology model by the Modeller tool within Chimera by using the MERS-CoV S structure (PDB: 6NB3) as template (2, 58, 59) and then used Rosetta to refine this region against the density map
4	6tys	-	https://www.biorxiv.org/content/10.1101/2021.07.09.451785.abstract	Study of Basic Local Alignment Search Tool (BLAST) and Multiple Sequence Alignment (Clustal-X) of Monoclonal mice/human antibodies	2021	IV Ferrari, P Patrizio- bioRxiv, 2021 - biorxiv.org	zone between 150-210 residues amino acids; with the exception of ID PDB 3I9G-3W9D 6TYS : (A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Antibodies all have the same basic structure consisting of two heavy and two light
5	5tw7	-	https://www.mdpi.com/2079-7737/10/7/594	Discovery of Novel GMPS Inhibitors of Candidatus Liberibacter Asiaticus by Structure Based Design and Enzyme Kinetic	2021	J Nan, S Zhang, P Zhan, L Jiang- Biology, 2021 - mdpi.com	SwissModel was employed to generate the three-dimensional structure of CLas GMPS using Neisseria gonorrhoeae GMPS ( PDB ID: 5TW7 ) as a The homology model of the CLas GMPS structure was a dimer (Figure 1). The quality of the three-dimensional structure of CLas
6	6nb3	6q04	https://internal-journal.frontiersin.org/articles/10.3389/fmolb.2021.607443/full	Molecular mechanisms behind anti SARS-CoV-2 action of lactoferrin	2021	M Miotto, L Di Rienzo, L B- Frontiers in, 2021 - internal-journal.frontiersin.org	Structural studies determined the structures of such protein both in free form and bound to ACE2 of the ACE2 receptor with SARS-CoV-2 spike receptor-binding domain, RBD ( PDB id: 6m17 ... The 10 structural analogs (as identified by TM-align Zhang and Skolnick (2005)) found by I-tasser are PDB id: 5X58, 6NZK, 6NB3, 3JCL, 5I08, 6CV0, 5SZS, 5WRG , 6UTK, 6B7N. The first (out of five) model returned
7	3o2e	-	https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15447	Phosphorylation status of BolA affects its role in transcription and biofilm development	2021	L Galego, S Barahona, CV Romo- The FEBS, 2021 - Wiley Online Library	NMR structure of mouse BolA1 ( PDB ID 1V60) and E. coli BolA ( PDB ID 2DHM) reveal a structure with similarity to nucleic acid binding proteins including a helix-turn [6]. MreB is a structural homologue of actin that is essential for cell elongation, maintenance of
8	7k45	-	https://www.science.org/doi/abs/10.1126/science.abm5835	SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies	2022	SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org	structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45),
9	7ly3	7ral	https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf	Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike	2022	V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com	The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2),
10	4ncx	4olf, 4q15, 4wi1	https://www.nature.com/articles/s41467-022-32630-4	Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance	2022	MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com	Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1).