We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9MF3 | 2024 | 0 |
| 9MF6 | 2024 | 0 |
| 9MFC | 2024 | 0 |
| 9MG7 | 2024 | 0 |
| 9MG9 | 2024 | 0 |
| 9MGJ | 2024 | 0 |
| 9MGV | 2024 | 0 |
| 9MGX | 2024 | 0 |
| 9MH2 | 2024 | 0 |
| 9MH4 | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6nb3 | - | https://convite.cenditel.gob.ve/revistaclic/index.php/revistaclic/article/view/1... | Origen del SARS-CoV-2 desde una perspectiva Bioinformtica | 2021 | R Isea- Conocimiento Libre y Licenciamiento (CLIC), 2021 - convite.cenditel.gob.ve | 6NB3 1359 MERS-CoV secuencias de la glicoprotena de espcula S que han sido recopiladas en la base de datos de protenas PDB Sequence analysis and structure predition of SARS-CoV-2 accesory proteins 9b and ORF14: evolutionary analysis indicates close |
| 2 | 7ly3 | 7ral | https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf | Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike | 2022 | V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com | The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2), |
| 3 | 7ly0 | - | https://www.nature.com/articles/s41564-022-01092-1 | Differential neutralizing antibody responses elicited by CoronaVac and BNT162b2 against SARS-CoV-2 Lambda in Chile | 2022 | ML Acevedo, A Gaete-Argel, L Alonso-Palomares- Nature, 2022 - nature.com | determined crystal structures ( PDB : 7BNN, PDB : 7BWJ, PDB : 7LY0 ). Structural alignments c) Same as a) for antibody S2M28 solved by CryoEM (PDBid: 7LY0 ), which recognizes the |
| 4 | 4g6c | - | https://www.nature.com/articles/s41467-022-33180-5 | The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases | 2022 | S Luang, X Fernndez-Luengo, A Nin-Hill- Nature, 2022 - nature.com | In this context, our aim was to provide direct structural evidence Based on these structures , we evaluate the reactant and that of Bacteroides -glucosidase ( PDB 5JP0) harbours the Glc ... while a β-hexosaminidase from Burkholderia cenocepacia10 folds into a single-domain (α/β)8 sandwich structure. |
| 5 | 6n41 | - | https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf | Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A | 2022 | CSS Holt - bibliotecadigital.exactas.uba.ar | El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia |
| 6 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |
| 7 | 7jx3 | 7k45 | https://www.nature.com/articles/s41392-022-00910-6 | Parallel profiling of antigenicity alteration and immune escape of SARS-CoV-2 Omicron and other variants | 2022 | C Sun, YF Kang, YT Liu, XW Kong, HQ Xu- Signal transduction and, 2022 - nature.com | All the structural representations were rendered using ChimeraX-1.1.1 or PyMOL. The complex structures used in this study are available at PDB (Accession number: 7KZB, 7K45, 7JX3 , |
| 8 | 7jv2 | 7jvc, 7jw0, 7ra8, 7ral | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010260 | Structural and antigenic variations in the spike protein of emerging SARS-CoV-2 variants | 2022 | A Mittal, A Khattri, V Verma- PLoS Pathogens, 2022 - journals.plos.org | Recent structural and functional studies have mapped the -CoV-2 variants; (2) the structural basis for antibody-mediated fitness, and in conjunction with the structures of the spike-nAb ... the neutralization mechanism involves direct competition with the ACE2 receptor. These antibodies include C002 (PDB: 7K8S) [70], C104 (PDB: 7K8U) [70], S2H13 (PDB: 7JV2) [77], C119 (PDB: 7K8U) [70], C121 (PDB: 7K8X) [70], LY-CoV555 (PDB: 7KMG), DH1041 (7LAA), COVA2-15 (EMD-22061) [82], 2–43 (EMD-22275) [94], |
| 9 | 3krs | 3s6d, 3kxq, 4nvt | https://ru.dgb.unam.mx/bitstreams/cc8caae0-4208-49cd-a137-8e463c67db89/download | La interfaz de la triosafosfato isomerasa: correlacin entre la hidratacin y mecanismo plegamiento | 2022 | EI Meja Jurez - 2022 - ru.dgb.unam.mx | Jones & Thornton, estudiaron 59 diferentes complejos encontrados en el PDB , de los cuales Todas las entradas del PDB utilizadas corresponden a protenas reportadas como dmeros |
| 10 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |