We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7r7n | - | https://www.nature.com/articles/s41467-022-28882-9 | Cryo-EM structure of a SARS-CoV-2 omicron spike protein ectodomain | 2022 | G Ye, B Liu, F Li- Nature communications, 2022 - nature.com | The atomic models generated in this study have been deposited into the PDB with accession number 7TGW (omicron open spike), 7TGX (prototypic open spike), and 7TGY (prototypic ... Forty-nine PDBs of neutralizing antibody/RBD complexes were analyzed using PDBePISA ... 7r7n, 7sn2. Fab: antigen-binding fragment. |
| 2 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |
| 3 | 4y0v | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.14560 | The structure of COPI vesicles and regulation of vesicle turnover | 2023 | RJ Taylor, G Tagiltsev, JAG Briggs- FEBS letters, 2023 - Wiley Online Library | of COPI coat protein structure , we describe how structural and biochemical studies (A) The structure of GDP-bound Arf1 ( PDB 4Y0V ) and GTPbound Arf1 ( PDB 1O3Y). GTP/GDP binding |
| 4 | 3gaf | - | https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 | Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability | 2023 | Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com | -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42], |
| 5 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 6 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 7 | 6xdh | - | https://www.cell.com/structure/pdf/S0969-2126(22)00495-6.pdf | Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser | 2023 | RJ Jernigan, D Logeswaran, D Doppler, N Nagaratnam- Structure, 2023 - cell.com | using the crystal structure of NendoU PDB entry 6XDH as the search model (Dranow et al., unpublished results) with all solvent and ligand atoms removed. The structure was refined |
| 8 | 4ywj | 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb | https://www.sciencedirect.com/science/article/pii/S0304416523000181 | The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets | 2023 | S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier | (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q), |
| 9 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S1476927123000208 | Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological | 2023 | KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier | Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model |
| 10 | 6tz8 | - | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011056 | Natural product ligands of FKBP12: Immunosuppressive antifungal agents FK506, rapamycin, and beyond | 2023 | A Rivera, J Heitman- PLoS pathogens, 2023 - journals.plos.org | adapted from Harnessing calcineurin-FK506-FKBP12 crystal structures from invasive fungal pathogens to develop antifungal agents ( PDB 6TZ8 ) [3]. The original figure was published |