We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3uve | - | https://www.nature.com/articles/s42003-022-03684-3 | A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans | 2022 | E Bokor, J mon, M Varga, A Szekeres- Communications, 2022 - nature.com | ( PDB code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve HxnM shows striking structural similarity with its closest known structural homolog, the |
| 2 | 4ixo | - | https://pubs.acs.org/doi/abs/10.1021/acs.chemrev.2c00106 | Designing Artificial Metalloenzymes by Tuning of the Environment beyond the Primary Coordination Sphere | 2022 | C Van Stappen, Y Deng, Y Liu, H Heidari- Chemical, 2022 - ACS Publications | structure of the active site of cytochrome c peroxidase ( PDB structure of the active site of the F43H/H64L Mb mutant ( PDB bound Ni 2+ ( PDB ID: 4IXO ) and (f) Co 2+ ( PDB ID: 4IWW). |
| 3 | 6vxx | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1852117 | Virtual screening of phytoconstituents from miracle herb nigella sativa targeting nucleocapsid protein and papain-like protease of SARS-CoV-2 for COVID-19 | 2022 | S Siddiqui, S Upadhyay, R Ahmad- Structure and, 2022 - Taylor & Francis | spike glycoprotein (closed state, PDB ID: 6VXX ), spike glycoprotein (open state, PDB ID: structures were subjected to refinements and energy minimizations. Whole pdb structures of |
| 4 | 7jx3 | 7k45 | https://www.nature.com/articles/s41392-022-00910-6 | Parallel profiling of antigenicity alteration and immune escape of SARS-CoV-2 Omicron and other variants | 2022 | C Sun, YF Kang, YT Liu, XW Kong, HQ Xu- Signal transduction and, 2022 - nature.com | All the structural representations were rendered using ChimeraX-1.1.1 or PyMOL. The complex structures used in this study are available at PDB (Accession number: 7KZB, 7K45, 7JX3 , |
| 5 | 6wpt | 7jw0, 7jx3 | https://www.nature.com/articles/s41467-022-32665-7 | Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape | 2022 | Z Zhao, J Zhou, M Tian, M Huang, S Liu, Y Xie- Nature, 2022 - nature.com | targeted by S309 in the prototype (yellow) ( PDB : 6WPT ) 6 and Omicron (orange). Key ( PDB : 7JW0) 24 was aligned with our Omicron RBD-S304 structure and these two structures were |
| 6 | 7k43 | 7k4n | https://www.nature.com/articles/s41401-021-00851-w | Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19 | 2022 | C Wu, W Yin, Y Jiang, HE Xu- Acta Pharmacologica Sinica, 2022 - nature.com | on uncovering structures and functions for structural biology of SARS-CoV-2 and discuss important biological issues that remain to be addressed. We present the examples of structure - ... S2E12 (represented as a cyan surface) binds to the “up” conformation of SARS-CoV-2 S RBD (PDB: 7K4N); S2M11 (represented as a brown surface) binds to the “down” conformation of SARS-CoV-2 S RBD (PDB: 7K43); |
| 7 | 5vxt | - | https://www.sciencedirect.com/science/article/pii/S0304389422001923 | Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds | 2022 | J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier | Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT). |
| 8 | 7jwk | 6mu0 | https://www.sciencedirect.com/science/article/pii/S002228362100588X | Building structural models of a whole mycoplasma cell | 2022 | M Maritan, L Autin, J Karr, MW Covert, AJ Olson- Journal of molecular, 2022 - Elsevier | PDB structure for a specific ingredient. Proteins with high sequence similarity and structural ... Ten of these experimental structures were used in our spatial model for the following gene products: MG396 (RpiB, 6MU0), MG027 (NusB, 1Q8C), MG191 .... The other four genes are only partially captured by experimentally-determined structures: MG200 (DnaJ-like, 4DCZ), MG238 (tig, 1HXV), MG301 (GapA, 7JWK), and MG469 (DnaA, 2JMP). |
| 9 | 7jv2 | 7jvc, 7jw0, 7ra8, 7ral | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010260 | Structural and antigenic variations in the spike protein of emerging SARS-CoV-2 variants | 2022 | A Mittal, A Khattri, V Verma- PLoS Pathogens, 2022 - journals.plos.org | Recent structural and functional studies have mapped the -CoV-2 variants; (2) the structural basis for antibody-mediated fitness, and in conjunction with the structures of the spike-nAb ... the neutralization mechanism involves direct competition with the ACE2 receptor. These antibodies include C002 (PDB: 7K8S) [70], C104 (PDB: 7K8U) [70], S2H13 (PDB: 7JV2) [77], C119 (PDB: 7K8U) [70], C121 (PDB: 7K8X) [70], LY-CoV555 (PDB: 7KMG), DH1041 (7LAA), COVA2-15 (EMD-22061) [82], 2–43 (EMD-22275) [94], |
| 10 | 5elo | - | https://www.nature.com/articles/s41467-022-33736-5 | Lysyl-tRNA synthetase, a target for urgently needed M. tuberculosis drugs | 2022 | SR Green, SH Davis, S Damerow, CA Engelhart- Nature, 2022 - nature.com | structure of M. tuberculosis LysRS was solved through molecular replacement using the structure of Cryptosporidium parvum LysRS ( PDB : 5elo ) 22 and the structure was refined using |