We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KI6 | 2021 | 12 |
| 3S4K | 2011 | 12 |
| 7JZN | 2020 | 12 |
| 4EQY | 2012 | 11 |
| 4LGV | 2013 | 11 |
| 3GKA | 2009 | 11 |
| 3EK2 | 2008 | 11 |
| 3ENK | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| 3UVE | 2011 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi2005398 | Structure and mechanism of PhnP, a phosphodiesterase of the carbon-phosphorus lyase pathway | 2011 | SM He, M Wathier, K Podzelinska, M Wong? - Biochemistry, 2011 - ACS Publications | ... distances in angstroms. (d) Wall-eyed stereoview of the PhnP?orthovanadate complex superimposed with B. melitensis phosphodiesterase (PDB entry 3md7) bound to guanosine 5'-monophosphate (gray sticks). PhnP residues ... |
| 2 | 3ndn | - | http://pubs.acs.org/doi/abs/10.1021/bi201090n | Characterization of the Side-Chain Hydroxyl Moieties of Residues Y56, Y111, Y238, Y338, and S339 as Determinants of Specificity in E. coli Cystathionine beta-Lyase | 2011 | PH Lodha, SM Aitken - Biochemistry, 2011 - ACS Publications | ... figure Scheme 2. Observed Contacts of the PLP-AVG External Aldimine Active Site of eCBL a. a The dotted lines represent putative hydrogen bond distances of ?3.3 ? between heteroatoms. The image was constructed using ChemDraw and PDB entry 1CL2.(3). ... |
| 3 | 3qbp | 3qh8 | http://dl.acm.org/citation.cfm?id=2213792 | Protein surface characterization using an invariant descriptor | 2011 | ZA Deeb, DA Adjeroh, BH Jiang - Journal of Biomedical Imaging, 2011 - dl.acm.org | ... 1. Introduction The Protein Data Bank (http://www.pdb.org/pdb/home/ home.do) (PDB) currently has more than 3000 protein struc- tures classified as uncharacterized or as proteins of unknown function. This is about 5% of the total structures in PDB. ... |
| 4 | 3gmt | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.22995/full | Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches | 2011 | D Armenta-Medina, E P?rez-Rueda? - Proteins: Structure, Function, and Bioinformatics, 2011 - Wiley Online Library | ... PDB ID, Organism, Resolution ?, Chain, %ID. 4ake, Escherichia coli, 2.20, A, 100. 3be4, Cryptosporidium parvum, 1.60, A, 45. 3fb4, Marinibacillus marinus, 2.00, A, 49. 3gmt, Burkholderia pseudomallei, 2.10, B, 66. 2c9y, Homo sapiens, 2.10, A, 49. 1ak2, Bos taurus, 1.92, A, 48. ... |
| 5 | 3oec | - | http://www.jbc.org/content/286/42/37011.short | Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme | 2011 | S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB | ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ... |
| 6 | 3hwk | - | http://www.sciencedirect.com/science/article/pii/S104784771000328X | Crystal structure of< i> Salmonella typhimurium</i> 2-methylcitrate synthase: Insights on domain movement and substrate specificity | 2011 | S Chittori, HS Savithri, MRN Murthy - Journal of Structural Biology, 2011 - Elsevier | ... In contrast, structural comparison of StPrpC with Mycobacterium tuberculosis GltA1 (MtGltA1; PDB: 3HWK; unpublished results) and Pyrococcus furiosus CS (PfGltA; type-I CS with shorter N-terminal) showed significant similarity in the core structure as well as in the flanking C-terminal extension... |
| 7 | 2kwl | 2l4b, 2l3v | http://onlinelibrary.wiley.com/doi/10.1002/pro.2050/full | Acyl carrier protein structural classification and normal mode analysis | 2012 | DC Cantu, MJ Forrester, K Charov, PJ Reilly - Protein Science, 2012 - Wiley Online Library | ... the amino acid residues between two structures compared for calculations; PDB: Protein Data Bank; PKS: polyketide synthase; RMSD: root mean square deviation; ThYme: Thioester active ... Protein Data Bank (PDB) ACP1 structures 1T8K, 1X3O, 2EHS, 2EHT, and 2QNW, ACP5 ... |
| 8 | 3qi6 | - | http://dx.plos.org/10.1371/journal.pone.0043080 | Comparative Genomics Analysis of Mycobacterium ulcerans for the Identification of Putative Essential Genes and Therapeutic Candidates | 2012 | AM Butt, I Nasrullah, S Tahir, Y Tong - PloS one, 2012 - dx.plos.org | ... Experimentally and computationally solved 3D structures were detected by searching the Protein Data Bank (PDB) (http://www.rcsb.org/pdb) [33] and ModBase (http://salilab.org/modbase) [34] databases, respectively. Druggability. ... |
| 9 | 3d53 | 3ome | http://pubs.rsc.org/en/content/articlehtml/2012/mt/c2mt20010d | Identification of two-histidines one-carboxylate binding motifs in proteins amenable to facial coordination to metals | 2012 | M Schmid, G Collet, P Cuniasse, F Gilardoni? - Metallomics, 2012 - pubs.rsc.org | ... 60% sequence similarity are indicated by a * PDB code, Annotated protein function, Carboxylate, Histidine 1, Histidine 2. ... Aminocarboxypropyl-transferase, Glu86*, His193*, His195*. 3D53, Pyrophosphatase, Asp114*, His76*, His77*. ... |
| 10 | 3dah | - | http://escholarship.org/uc/item/29g595sg.pdf | Modeling of Protein Flexibility and Inter-Molecular Interactions: Applications to Computer-Aided Drug Design and Discovery | 2012 | R Ai - 2012 - escholarship.org | ... Page 22. xxi Figure 5.1 .95 Summary of ligand binding capacity and subdomains of HSA using PDB structure 1E7E. Long-chain fatty acids are depicted in VDW representation using VMD 1.8.7. ... |