We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3I3R | 2009 | 11 |
| 4EQY | 2012 | 11 |
| 3KM3 | 2009 | 11 |
| 4LGV | 2013 | 11 |
| 3EK2 | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| 3UVE | 2011 | 11 |
| 3NDN | 2010 | 11 |
| 3GKA | 2009 | 11 |
| 4G7F | 2012 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4kam | - | https://www.nature.com/articles/s42003-020-0954-9 | Adaptive laboratory evolution enhances methanol tolerance and conversion in engineered Corynebacterium glutamicum | 2020 | Y Wang, L Fan, P Tuyishime, J Liu, K Zhang- Communications, 2020 - nature.com | Synthetic methylotrophy has recently been intensively studied to achieve methanol-based biomanufacturing of fuels and chemicals. However, attempts to engineer platform microorganisms to utilize methanol mainly focus on enzyme and pathway engineering... The model structure of the wild-type Cgl0653 was constructed with the crystal structure of O-acetyl-L-homoserine sulfhydrylase from Mycobacterium marinum ATCC BAA-535 (PDB ID: 4KAM) as a template (54% sequence identity with Cgl0653) |
| 2 | 3gmt | - | http://www.sciencedirect.com/science/article/pii/S2211546314000679 | Adenylate kinase from< i> Streptococcus pneumoniae</i> is essential for growth through its catalytic activity | 2014 | TT Thach, TT Luong, S Lee, DK Rhee - FEBS Open Bio, 2014 - Elsevier | ... Open, ligand-free SpAdK structure was solved by molecular replacement using PHENIX [35] with AdK from Marinibacillus marinus (PDB ID: 3FB4) and Burkholderia pseudomallei (PDB ID: 3GMT) as search models. ... |
| 3 | 4di0 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5114695/ | Aerobic lineage of the oxidative stress response protein rubrerythrin emerged in an ancient microaerobic,(hyper) thermophilic environment | 2016 | JP Cardenas, R Quatrini, DS Holmes - Frontiers in Microbiology, 2016 - ncbi.nlm.nih.gov | ... F9VPE5; PDB entry 1J30) and a rubrerythrin from Burkholderia pseudomallei (Uniprot accessionQ3JK2; PDB entry 4DI0) have three dimensional structures in the PDB. ... This difference in genecluster structure among members of the same phylum may be a reflection of the ... |
| 4 | 3urr | - | https://journals.asm.org/doi/abs/10.1128/jb.00023-23 | All dacs in a row: domain architectures of bacterial and archaeal diadenylate cyclases | 2023 | MY Galperin- Journal of Bacteriology, 2023 - Am Soc Microbiol | The search of the AlphaFold-predicted structure of DACNG using Dali (90) does not show any closely related structures in the PDB . This domain can also be found in a stand-alone ... PTS_EIIA_2 PF00359 139 3URR |
| 5 | 7jzl | 7jzn | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00766 | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A | 2021 | GM Verkhivker, S Agajanian, DY Oztas- Journal of Chemical, 2021 - ACS Publications | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling |
| 6 | 3obk | - | http://www.sciencedirect.com/science/article/pii/S000398611100347X | Allostery and the dynamic oligomerization of porphobilinogen synthase | 2012 | EK Jaffe, SH Lawrence - Archives of biochemistry and biophysics, 2011 - Elsevier | ... B) Subunits B, A and E (corresponding to subunits A,B and F of the oligomers illustrated in part A) of T. gondii PBGS (pdb: 3OBK) are shown as dark teal, gray and light teal cartoons with the remaining subunits of the 8mer shown as transparent white spheres. ... |
| 7 | 4yet | 3js4 | http://www.doiserbia.nb.rs/Article.aspx?id=0352-51392100042S | Amide- interactions in active centers of superoxide dismutase | 2021 | S Stojanovi, ZZ Petrovi- Journal of the Serbian, 2021 - doiserbia.nb.rs | A, 3js4:A, 3lio:A, 3lsu:A, 3mds:A, 3pu7:A, 3tqj:A, 4br6:A, 4c7u:A, 4f2n:A, 4ffk:A, 4yet :A, 5a9g 7. Example of the structure preferred amide interactions of FeSOD from the Thermosynechococcus elongatus ( PDB code 1my6): (a) parallel-displaced and (b) T-shaped structure |
| 8 | 4o6r | 4kna, 3i44, 3ek1 | http://www.sciencedirect.com/science/article/pii/S0009279715000253 | Amino acid residues that affect the basicity of the catalytic glutamate of the hydrolytic aldehyde dehydrogenases | 2015 | RA Muñoz-Clares, L González-Segura… - Chemico-Biological Interactions, 2015 - Elsevier | ... groups as sticks with carbon atoms colored depending on the structure, oxygen in ... Family organism,enzyme (PDB code), pH crystal c, pK a, Hydrogen bond d ... Burkholderia cenocepacia, BCAM0469,AMP-complex (4O6R), 6.5, 7.42, Cys302↓ Gly270↓/Lys178↓ Glu399↑ Glu476 ... |
| 9 | 4dlp | 4ncx | https://www.biorxiv.org/content/early/2018/10/11/440891.abstract | Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study | 2018 | DW Nyamai, OT Bishop- bioRxiv, 2018 - biorxiv.org | are highly conserved in their catalytic domains, in general aaRSs show sequence, structural 62 catalytic site architecture and the manner of charging tRNA [18,20] the connective peptide I (CPI) in all enzymes in this class whose structure is characteristic of 113 |
| 10 | 4gri | - | https://journals.asm.org/doi/abs/10.1128/ecosalplus.ESP-0002-2016 | Aminoacyl-tRNA synthetases in the bacterial world | 2016 | R Gieg, M Springer- EcoSal Plus, 2016 - Am Soc Microbiol | Note that aaRSs requiring cognate tRNA for activation can tightly bind their amino acid substrates in the absence of tRNA, thereby leading to inactive conformers as seen, e.g., in E. coli ArgRS (4oby) (178) and B. burgdorferi GluRS (4gri) (unpublished from the Seattle Structure Genomics Center for Infectious Disease). |