We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5IXU | 2016 | 0 |
| 5IZ4 | 2016 | 0 |
| 8SAA | 2023 | 0 |
| 8SAB | 2023 | 0 |
| 8SAC | 2023 | 0 |
| 5JSC | 2016 | 0 |
| 8SAD | 2023 | 0 |
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4e98 | 4iyq | https://riunet.upv.es/handle/10251/117999 | Bases estructurales de la sealizacin y regulacin por nitrgeno y procesos asociados. | 2019 | L Tremio Agull - 2020 - riunet.upv.es | PDB : banco de datos de protenas (Protein Data Bank: https://www.rcsb.org/ pdb /home/home. do) PEG 49 Captulo 1: Studies on cyanobacterial protein PipY shed light on structure , potential functions Functional and structural studies in bacteria ----- 117 |
| 2 | 2kok | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsfs.2019.0003 | A deep learning approach to the structural analysis of proteins | 2019 | M Giulini, R Potestio- Interface focus, 2019 - royalsocietypublishing.org | Second, we show that the application of a simple, standard and computationally not expensive DL architecture to the selected features gives satisfactory results, suggesting that The raw data employed in the present work, including PDB files, protein structure datasets, CNN ... Eigenvalues associated with 2KOK, 2YQD, and 1MEK were predicted with reasonable accuracy, the overall average MAPE being 30.7, 35.5 and 48.3, respectively. |
| 3 | 4lc3 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.170248 | Structural and functional studies of Spr1654: an essential aminotransferase in teichoic acid biosynthesis in Streptococcus pneumoniae | 2018 | X Han, R Sun, T Sandalova, A Achour- Open biology, 2018 - royalsocietypublishing.org | The crystal structures of Spr1654 and in complex with PLP and PMP can direct the future rational design of novel therapeutic compounds against S. pneumoniae... The crystal structures were determined by molecular replacement in Phaser [40] using the crystal structure of UDP-4-amino-4-deoxy-l-arabinose-oxoglutarate aminotransferase from Burkholderia cenocepacia (PDB code: 4LC3) as search model. |
| 4 | 4jgb | 4jga | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200099 | TAK1: a potent tumour necrosis factor inhibitor for the treatment of inflammatory diseases | 2020 | J Totzke, SA Scarneo, KW Yang- Open, 2020 - royalsocietypublishing.org | A general core structure for type II binders has been developed, consisting of a hydrophobic moiety Structural disorder of this region is often cited as a reason for the missing residues of Ligand 10 (purple, PDB 4JGA), 11 (orange, PDB 4JGB ) and 12 (dark green, PDB 4JGD) are |
| 5 | 5bt8 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302 | Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea | 2020 | M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org | bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI) |
| 6 | 4wgj | 4lu4, 4py3, 4xi8 | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.210009 | Fic and non-Fic AMPylases: protein AMPylation in metazoans | 2021 | BK Chatterjee, MC Truttmann- Open Biology, 2021 - royalsocietypublishing.org | name, organism name, references, function/targets, structure ( PDB ID) BepC, Bartonella henselae, [59], triggers actin stress fibre formation in HeLa cells, 4WGJ salt bridges occur between (a) Asp117 and Lys119 of the extended flap region (a -hairpin like structure that partially |
| 7 | 3r9r | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2018.0422 | Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping | 2019 | SE Thomas, P Collins, RH James- of the Royal, 2019 - royalsocietypublishing.org | purine biosynthesis in maintaining the viability of cells and differences in the structural architecture of bacterial The crystals are similar to those of a previously determined structure of MabPurC with a monomer in the asymmetric unit (figure 1b) ( PDB 3R9R , Seattle Structural |
| 8 | 3s6d | 4nvt, 4g1k, 3kxq | https://ru.dgb.unam.mx/bitstreams/ca3f11da-2906-4725-9e14-821490ba5bf5/download | El paisaje conformacional de las protenas: estudio de barriles TIM naturales y diseados de novo | 2017 | S Romero Romero - 2017 - ru.dgb.unam.mx | of one of them, ReTIM18, was determined; its structure shows that the interactions were correctly designed, since the RMSD between the Rosetta model and the structure is only 0.87 . |
| 9 | 3krs | 3s6d, 3kxq, 4nvt | https://ru.dgb.unam.mx/bitstreams/cc8caae0-4208-49cd-a137-8e463c67db89/download | La interfaz de la triosafosfato isomerasa: correlacin entre la hidratacin y mecanismo plegamiento | 2022 | EI Meja Jurez - 2022 - ru.dgb.unam.mx | Jones & Thornton, estudiaron 59 diferentes complejos encontrados en el PDB , de los cuales Todas las entradas del PDB utilizadas corresponden a protenas reportadas como dmeros |
| 10 | 6nb8 | - | https://saudijournals.com/media/articles/SIJB_36_143-153.pdf | Drug Targets for Corona Virus (COVID-19): A Systematic Review | 2020 | K Jayakumar - 2020 - saudijournals.com | to neutralize it, and their structures are also available ( PDB IDs: 6NB6, 6NB7, and 6NB8 .The monoclonal antibody, m396, has a competitive role for RBD binding ( PDB ID: 2DD8 However, the structure is highly variable among different members of the CoV family |