We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
Structure | Year released | #citations |
---|---|---|
6NMO | 2020 | 0 |
6NHI | 2019 | 0 |
3JS9 | 2009 | 0 |
5IXU | 2016 | 0 |
6NDR | 2018 | 0 |
5IZ4 | 2016 | 0 |
4LNE | 2013 | 0 |
6Q10 | 2019 | 0 |
6Q1Y | 2019 | 0 |
6TYJ | 2020 | 0 |
# | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
---|---|---|---|---|---|---|---|
1 | 3k2c | - | https://www.sciencedirect.com/science/article/pii/S016158901930197X | The Schistosoma mansoni cyclophilin A epitope 107-121 induces a protective immune response against schistosomiasis | 2019 | TT de Melo, MM Mendes, CC Alves, GB Carvalho- Molecular, 2019 - Elsevier | The resulting structure was predicted using six templates (4I9Y: e3 sumo-protein ligase Cyclophilin from Homo sapiens, variant A; 1IHG: bovine cyclophilin 40, 3K2C : peptidyl-prolyl cuniculi; 1XO7: Cyclophilin from Trypanosoma cruzithe bovine Cyclophilin 40 ( PDB code: c1ihgA |
2 | 4pq9 | - | http://www.jbc.org/content/early/2019/09/09/jbc.RA119.010619.short | A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) | 2019 | AH Viborg, N Terrapon, V Lombard, G Michel- Journal of Biological, 2019 - ASBMB | by the presence of numerous helical elements on the core -jelly-roll fold, two in the N-terminal region and four in the C- terminal region, most of which are located on the opposite side of the structure from the active A tryptophan (W154 in PDB ID 4PQ9 (unpublished)) present |
3 | 4djt | - | https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkz478/549... | PatchSearch: a web server for off-target protein identification | 2019 | J Rey, I Rasolohery, P Tuffry, F Guyon- Nucleic acids, 2019 - academic.oup.com | 4djt 22.3 0.376 positive 10.378 The patch was extracted around ADP in the 1lkx myosin structure . Structural similarities between the patch and the entire surface of 40 PDB structures known to be able to interact, ie 'positive', or not, 'negative', with ADP or similar ligands |
4 | 4fi5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913923/ | Identification and validation of specific B-cell epitopes of hantaviruses associated to hemorrhagic fever and renal syndrome | 2019 | F de Paiva Conte, BC Tinoco, TS Chaves- PLoS Neglected, 2019 - ncbi.nlm.nih.gov | 1) was performed against the expasy SWISS-MODEL template server [26][2][2]. Three structures were selected ( PDB ID: 5E04, 5FSG, 4FI5 ) with the The lowest energy model was selected using PyMOL Version 1.8 and your 3D structure evaluated with Verify 3D [29, 30 |
5 | 4hvt | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.9b00031 | Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase | 2019 | K Ellis-Guardiola, H Rui, RL Beckner, P Srivastava- Biochemistry, 2019 - ACS Publications | Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase While extensive structural characterization of bacterial and mammalian POPs has been performed, no structures for archaeal POPs have been reported |
6 | 3men | - | https://www.degruyter.com/view/j/psr.2019.4.issue-10/psr-2019-0066/psr-2019-0066... | Combined approach of homology modeling, molecular dynamics, and docking: computer-aided drug discovery | 2019 | V Chahal, S Nirwan, R Kakkar- Physical Sciences Reviews, 2019 - degruyter.com | Figure 2: Steps involved in homology modeling for 3D structure prediction sequences of proteins with known 3D structures available in various depositories such as PDB , using the In some cases, a single template is not enough to provide the complete structural information ... This catalytic domain was modeled using the I-TASSER server [98] by exploiting the solved crystal structures of some HDAC proteins having structural identities (2VCG (37%), 1ZZ0 (37%), 1C3P (29%), 3MEN (36%), 3COY (47%), |
7 | 3k5p | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.8b00990 | 3-Phosphoglycerate Transhydrogenation Instead of Dehydrogenation Alleviates the Redox State Dependency of Yeast de Novo l-Serine Synthesis | 2019 | N Paczia, J Becker-Kettern, JF Conrotte- Biochemistry, 2019 - ACS Publications | Structural Biology Unit, CIC bioGUNE Technological Park of Bizkaia, 48160 Derio , Vizcaya , Spain. IKERBASQUE, Basque Foundation for Here, we provide a detailed biochemical and sequence structure relationship characterization of the yeast PHGDH homologues |
8 | 3oj6 | 6cuq, 4o3v | https://www.biorxiv.org/content/10.1101/673897v1.abstract | Combining statistical and neural network approaches to derive energy functions for completely flexible protein backbone design | 2019 | B Huang, Y Xu, H Liu- bioRxiv, 2019 - biorxiv.org | To design a backbone, an intended framework is specified first. This framework defines at a very coarse level the intended backbone architecture , including the numbers For each native structure with the given PDB ID, results of four simulations are plotted in different |
9 | 6omz | - | https://www.teses.usp.br/teses/disponiveis/76/76132/tde-08052020-092357/en.php | Estudos estruturais e descoberta de ligantes da enzima diidropteroato sintase de Xanthomonas albilineans para o combate da escaldadura das folhas | 2019 | AA Oliveira - teses.usp.br | product) and v. Screening, identification, validation and structural detailing of complexed receptor target structure (SBDD) and the fragment (FBDD) to be applied for tularensis ( PDB 3MCM), Coxiella burnetii ( PDB 3TR9), Mycobacterium smegmathis ( PDB 6OMZ ), Vibrio fischer |
10 | 2klx | - | http://rave.ohiolink.edu/etdc/view?acc_num=osu1554977217363556 | Studies in Computational Biochemistry: Applications to Computer Aided Drug Discovery and Protein Tertiary Structure Prediction | 2019 | ML Aprahamian - 2019 - rave.ohiolink.edu | structures were identified using a receiver operator characteristic (ROC) analysis and a set of known binding compounds. Using these structures as the receptors for structure -based drug discovery, a virtual screen was performed on the National Cancer Institute's ... The six proteins selected from the ab initio set were PDB ID 1tpm, 2klx, 2nc2, 2y4q, 3iql, and 4omo. |