We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5V0U | 2017 | 0 |
| 5V77 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VIX | 2017 | 0 |
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| 2MRL | 2014 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hzu | 3hwi | https://www.nature.com/articles/s41598-019-53069-6 | Mycobacterium tuberculosis CysA2 is a dual sulfurtransferase with activity against thiosulfate and 3-mercaptopyruvate and interacts with mammalian cells | 2019 | AN Meza, CCN Cambui, ACR Moreno, MR Fessel- Scientific reports, 2019 - nature.com | dimensional structures of M. tuberculosis CysA2 ( PDB code 3HIW, yellow), CysA3 ( PDB code 3AAY, red) and SseA ( PDB code 3HZU , blue) Based on the available three-dimensional structure of CysA2, we performed a comparison with putative orthologues studied in the |
| 2 | 4qfh | 4g7f, 4gie | https://www.mdpi.com/2218-273X/9/9/484 | Insights into Ergosterol Peroxide's Trypanocidal Activity | 2019 | T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com | \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407 |
| 3 | 6mb1 | 6mb0, 6may, 6maz | https://spiral.imperial.ac.uk/handle/10044/1/85451 | N-myristoyltransferase inhibitor binding mode and phenotype in the malarial parasite. | 2019 | AC Schlott - 2019 - spiral.imperial.ac.uk | lacks myristoylation and instead contains a hydro- phobic N-terminal sequence interacting with the Golgi membrane; its location resembles the distribution of GRASP1, but its structure may result 2010) N-Myristoyltransferase from Leishmania donovani: Structural and Functional ... One of them is the aminomethylindazole series including compounds IMP-0917 (PDB: 5O6H) (Mousnier et al. 2018), and IMP-1002 (PDB: 6MB1) (Schlott et al. 2019) |
| 4 | 3pk0 | 3rih | http://atrium.lib.uoguelph.ca/xmlui/handle/10214/16112 | Structural and functional characterization of the aminoacetone utilization microcompartment from Mycobacterium smegmatis MC2 155 | 2019 | E Mallette - 2019 - atrium.lib.uoguelph.ca | P)(H) - nicotninamide adenine dinucleotide (phosphate)(reduced) NTP - nucleotide triphosphate PDB - protein data bank (protein structure archive) PDU 1.2.1 Superstructure Architecture Microcompartments were first visualized in electron micrographs of carboxysome |
| 5 | 6bfu | - | https://link.springer.com/article/10.1186/s12859-019-3097-6 | Glycosylator: a Python framework for the rapid modeling of glycans | 2019 | T Lemmin, C Soto- BMC bioinformatics, 2019 - Springer | 1 ha0. 5fyl (gp120). 6bfu . Number of sequons. 6 A second N-Acetyl-D-Glucosamine will then be linked through a 1-4 glycosidic bond. Finally, an Alpha-D-Mannosewill be built ab initio and saved to a PDB file The structure of a mannose 9 will be imported as a Molecule instance |
| 6 | 3tmg | - | https://www.frontiersin.org/articles/10.3389/fmicb.2019.02572/full?report=reader | Examination of the Glycine Betaine-Dependent Methylotrophic Methanogenesis Pathway: Insights Into Anaerobic Quaternary Amine Methylotrophy | 2019 | AJ Creighbaum, T Ticak, S Shinde, X Wang- Frontiers in, 2019 - frontiersin.org | We therefore generated models of MV8460 using the apo-crystal structure of DhMtgB ( PDB 2QNE) as a (A) The models represent the aligned global structure of DhMtgB Various crystal structures of GB-binding enzymes; 1R9L (Schiefner et al., 2004), 6EYG, 3TMG (Li et al |
| 7 | 6d8w | 6n41 | https://www.tandfonline.com/doi/abs/10.1080/21645515.2019.1653743 | Computationally optimized broadly reactive vaccine based upon swine H1N1 influenza hemagglutinin sequences protects against both swine and human isolated | 2019 | AL Skarlupka, SO Owino- Human vaccines &, 2019 - Taylor & Francis | The known crystal structure were used for A/California/07/2009 ( PDB accession: 3lzg23) and A/Swine/Indiana/P12439/2000 templates were chosen for model building.29 The crystal struc- tures of A/Jiangsu/ALSI/2011 (H1N1) HA ( PDB accession: 6d8w ) was selected |
| 8 | 3laa | - | https://www.sciencedirect.com/science/article/pii/S1047847719301728 | Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding | 2019 | KM Mikula, R Kolodziejczyk, A Goldman- Journal of structural biology, 2019 - Elsevier | 2012) as found in SadA (2YO2, 2YNZ) (Hartmann et al., 2012) or BpaA ( 3LAA ) (Edwards et CCP4 package (Winn et al., 2011) with the structure of UspA1 165366 ( PDB : 3PR7) (Agnew Model of UspA1 299452 structure solved in this study, neck and coiled-coil domains; chain |
| 9 | 6n38 | - | https://www.frontiersin.org/articles/10.3389/fmicb.2019.01615/abstract | Baseplate component TssK and spatio-temporal assembly of T6SS in Pseudomonas aeruginosa | 2019 | D Liebl, M Robert-Genthon, V Job, V Cogoni- Frontiers in, 2019 - frontiersin.org | TssE is the structural homolog of the T4 phage baseplate components gp25 (Leiman et al To confirm that TssK and TssE assemble into the same spot-like structure we generated and Mekalanos, 2012; Vettiger and Basler, 2016), very low number of TssB- structures were seen... The TssK oligomers disassemble upon action of PppA (shown in dashed lines). Stoichiometry (TssK3)2(TssF2/TssG) in accordance with cryo-EM structure (PDB 6N38) is shown. |
| 10 | 3nfw | - | https://pubs.rsc.org/doi/c9se00523d | The oxygen reduction reaction catalyzed by Synechocystis sp. PCC 6803 flavodiiron proteins | 2019 | KA Brown, Z Guo, M Tokmina-Lukaszewska- Sustainable Energy &, 2019 - pubs.rsc.org | 3, 12 and 13) and provide more insights into the Flv structure , substrate reactivity and protein based on heuristics to maximize confidence, percentage identity and alignment coverage ( PDB IDs: 1VME for the oxidoreductase domain: 5ZC2, 55 3RH7, 4HX6, 56 3K87, 57 3NFW 58 |